Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2042 ATGAACGACCTGTTATCAGGTTTGTTCTCGAAGCAGGGAAAACAACAAGAGGAGCACGTGATCGAGATAACGGCACAAGGTGGTGGAATGGATATGGAAAAGTTTATGGAAGAAGTGGAATCAGTGAAGGAAGAAGTGAAGGAGCTAGAGTGTCTCCATGAAAGCCTACGAGCTACGAACCAAAACGGAAAAGCGGTTCACAGCCCAAAGGGCGTGAGGGAGGTTCGGTCACGCATGGACCTGGACGTGGCTCTTTCTCTCACGAAAGCCAAGCGAATCAAGACTCGGTTGGAGGCTCTCCACCGCGGCAACCAAGCCAGCCTCTCCTTGCCCGATTGCGGACCCGGATCGTATTCCCACCGGACCCGAACCGCGCTCGTTGGGGCCCTGACGAAGAACCTTAGACAGTCGATGGAGAGTTTCAATAAGCTGAGAGAGCAGATATCGTACGAGTACAGAGAAACAGTGCAACGTAGATACTACGCTGTGACCGGAGACAACCCTGATGAAGATACCATCGACCTCCTGATCTCTACAGGTGAGAGCGAAACATTCTTACAGAAAGCAATCCAACAGCAAGGTCGAGCGACGATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGGACGGTGAAGGAGTTGGAGAGAAATCTGCAGGAGCTTCACCAAGTGTTCATGGACATGGCTGTGCTTATCCAACACCAGGGTGAACACTTGGACGACATTGAGACCCACGTGGAACTCGCTAATTCCTTCGTTGCCAAAGGTGTTCAGCATTTGCATGTTGTCAGGAATCATCATCAGAAGAACACCCGCAACTGCACTTGTTTCGCCATACTGCTCTTCATCATCGCCTTGGTCATAGTTCTCCCCATTGTTTTCAGAAATTGA 894 0.5067 MNDLLSGLFSKQGKQQEEHVIEITAQGGGMDMEKFMEEVESVKEEVKELECLHESLRATNQNGKAVHSPKGVREVRSRMDLDVALSLTKAKRIKTRLEALHRGNQASLSLPDCGPGSYSHRTRTALVGALTKNLRQSMESFNKLREQISYEYRETVQRRYYAVTGDNPDEDTIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHGTVKELERNLQELHQVFMDMAVLIQHQGEHLDDIETHVELANSFVAKGVQHLHVVRNHHQKNTRNCTCFAILLFIIALVIVLPIVFRN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2042 297 Coils Coil 32 59 - -
Aed2g2042 297 Pfam SNARE domain 240 291 IPR000727 -
Aed2g2042 297 SMART SynN_4 27 153 IPR006011 GO:0016020
Aed2g2042 297 SMART tSNARE_6 197 264 IPR000727 -
Aed2g2042 297 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aed2g2042 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Aed2g2042 297 CDD SNARE_syntaxin1-like 201 261 - -
Aed2g2042 297 PANTHER SYNTAXIN-121 13 292 - -
Aed2g2042 297 PANTHER SYNTAXIN 13 292 IPR045242 -
Aed2g2042 297 Gene3D - 32 159 - -
Aed2g2042 297 SUPERFAMILY t-snare proteins 29 257 IPR010989 GO:0016020|GO:0016192
Aed2g2042 297 Gene3D - 190 295 - -
Aed2g2042 297 Pfam Syntaxin 34 237 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2042 Aed-Chr2 24813695 24814588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2042 28 277 SNARE and Associated Proteins AT3G11820 60.800 1.47e-108 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2042 K08486 - gmx:100810727 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2042 2 24813695 24814588 Aed8g0620 8 5368473 5371338 PCT