Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2038 ATGGACAACGAGATCGATGTTCCTTCGTTCTTTCTCTGCCCCATCTCGTTAGACATCATGAAGGATCCAGTGACGGTGTCAACGGGAATCACCTACGACCGTGAAAGCATCGAAACGTGGCTGTTCTCGAAGAAAAACACGACATGCCCCATCACCAAACAATCTTTGATAGATGATGACACCGATCTCACACCAAACCACACCCTTCGGAGACTCATCCAAGCGTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACCCCGAAACCCCCCGTTAACAAGAATCAAATCTCCAAGCTTCTCAAAGACGCTTCGAATTCTCATTCCCCTCTCACGTGCCTCCGAAAACTCAAATCCATCGCTTCGGGAAGTGAAACAAATAAGCGATGCATGGAAGCTTCTGGTGCTGTTGAGTTTCTAGCATCAATTGTAATCAACAACAACAACAACATCGAGTCTGACCCAAATGACGGATTTGGATTCGAGTTGAAACCAAGTGCAAGCGATGAAGCGCTGAGCTTGCTTCACAATCTTCATTTATCTGAACAAGGGTTGAAGACTCTCTTAAGCTTCAGAAACGGCGAGTTTATTGAGTCTTTAACAAGAGTCATGCAAAAGGGGTTCTTTGAATCTCGCGCTTATGCGGTTTTCTTGTTGAGATCCATGTCCGAAGTGGCCGAGCCAGTGCAACTATTGCATCTAAAACAAGATCTCTTCGTGGAGCTAGTACAAGTTTTGAAGGATCAAATTTCAATAAAGACATCAAAAGCATCCCTACAGACCCTAATCCAATTCTCTCCATGGGGGAGGAACAGGATCAAAGCTGTGGAAGCAGGAACCGTTCCTGTTTTGATAGAACTTCTACTCGATTGCATGGAGAGAAAGCCTTGTGAGATGATGCTAGTGCTGTTGGAATTGCTGTGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAGTCATGGAGCGGGTCTTGCCCTTGTGTCCAAAAAGATTCTAAGGGTTTCGACTTTGGCGAATGATAGAGCTGTTAAGATTATTCTGTCTGTTTCGAGATTCTCCGCTACTCCACATGTTGTTCAAGAAATGCTTAAACTCGGTGTGGTCGCAAAACTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAAGGCTAAGGAAAAAGCAAGAGAGATACTCAAATTGCATGCTCGTGCGTGGAGGAATTCTCCATGCATACCAAGCAATTTGCTTAATTCATACCCGGCATATATGTGA 1260 0.4532 MDNEIDVPSFFLCPISLDIMKDPVTVSTGITYDRESIETWLFSKKNTTCPITKQSLIDDDTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKNQISKLLKDASNSHSPLTCLRKLKSIASGSETNKRCMEASGAVEFLASIVINNNNNIESDPNDGFGFELKPSASDEALSLLHNLHLSEQGLKTLLSFRNGEFIESLTRVMQKGFFESRAYAVFLLRSMSEVAEPVQLLHLKQDLFVELVQVLKDQISIKTSKASLQTLIQFSPWGRNRIKAVEAGTVPVLIELLLDCMERKPCEMMLVLLELLCQCAEGRAELLSHGAGLALVSKKILRVSTLANDRAVKIILSVSRFSATPHVVQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPSNLLNSYPAYM 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2038 419 Pfam U-box domain 7 80 IPR003613 GO:0004842|GO:0016567
Aed2g2038 419 SUPERFAMILY RING/U-box 4 84 - -
Aed2g2038 419 CDD RING-Ubox_PUB 11 54 IPR045210 -
Aed2g2038 419 Gene3D - 96 404 IPR011989 -
Aed2g2038 419 SMART Ubox_2 10 76 IPR003613 GO:0004842|GO:0016567
Aed2g2038 419 PANTHER WDSAM1 PROTEIN 3 416 IPR045185 GO:0061630
Aed2g2038 419 ProSiteProfiles U-box domain profile. 6 83 IPR003613 GO:0004842|GO:0016567
Aed2g2038 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Aed2g2038 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 416 - -
Aed2g2038 419 SUPERFAMILY ARM repeat 100 390 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2038 Aed-Chr2 24786825 24788084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2038 1 417 U-box Gene Family AT3G52450 57.437 1.24e-178 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2038 - - gmx:100811258 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2038 2 24786825 24788084 Aed2g2038 2 24786825 24788084 ECH
Aed2g2038 2 24786825 24788084 Aed8g0614 8 5274087 5276092 PCT
Aed8g0615 8 5293904 5295385 Aed2g2038 2 24786825 24788084 PCT