Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2037 ATGGATGAAATTGAAATTCCTCAGTATTTCATCTGCCCCATATCCCTTCAAATCATGAAAGACCCAGTAACCACCATAACAGGCATCACATACGACCGAGACAGCATTGAGCAATGGTTATTCACCAACAAAAACACCACATGCCCAATCACAAGACACCCTCTCCCTATAGACTCTGACCTAACTCCAAATCACACCCTTTTCCGCCTAATCCAAGCTTGGTGCACCCAATTTAATATTCATTATAGGATTCCCACGCCTAAGCCACCACTTAACAAACTACAAGTCATGAAACTCCTCAAGGACCCCAACTTGCAACTCAAAACGATCAAGGAATTGAAACTGCTAGCATCTGATGATCAGAACAAGAAAAATAGCAAGTGCTTATTACTACAGGCTGGTGTCCCAAAGGCCATGATCCTATTCATCTTGAATTGTTTTAGAAAAGGTCAACATGATAAGGCTCTAGAAGAAGCCTTAAGTTTACTGCAGCTTGTTGATGTGCCGGAAGAGGAAATGAAGCTTCTTCTAGCGGAAAAATACGATCAACTATTGGATTCCCTGACGTGGGTTTTGGGCTGCGAGGTGGAGAATTCAATTGCTGTGAAATCCCATGCATTGACGTTACTCAACACAGTCATGCAAGAAGCTAGCTCCAACGTAATGGAAAGACTTAAACCTGAGGTGTTTGAAACGATTGTGAAAGTTTTACGATGTGGGACTACCCAACAAGGAATGAAAGCTGGTCTTCATGCCCTGTTAAGCGCATGCCACTGGGGGAGAAACAGGATAATGATGGTGGAAAGTGGTGCAGTCTTTGAGCTCGTGGAGATTGAATTCGTGACAAACGAAAAGAGAAGCACGGAACTCACGATGATGATACTGTTTCATCTGTGTTCTTGCGCTGAGGGAAGAGCTCAGTTTCTGAGTCACAGAGGTGCCGTTGCTTTGTTGACGGAGCGAATGTTCACGGTTTCGCATGCGGTGGATGACAGAGCCGTGGGTATTCTTTCATTGGTGCTGTCTTCGTTCTCTGCCACACATGTGGTCCTTCAGGAGATGCTGGAGTTTGGAACTGTGTCTAAGCTTTGTATGTTGGTTCAGACTGGTGATCATCATCATGGCACGTGTCAACGGAAACACACAGCGAGGGAAATGCTCAAGTCTCATGCTCACGTATGGATCAAACATTCTCCTCCTGCTTGCATTTCTGAGCGTCATCGATCGCTCCTTTTATGCGAGGTTAAGTAA 1251 0.4484 MDEIEIPQYFICPISLQIMKDPVTTITGITYDRDSIEQWLFTNKNTTCPITRHPLPIDSDLTPNHTLFRLIQAWCTQFNIHYRIPTPKPPLNKLQVMKLLKDPNLQLKTIKELKLLASDDQNKKNSKCLLLQAGVPKAMILFILNCFRKGQHDKALEEALSLLQLVDVPEEEMKLLLAEKYDQLLDSLTWVLGCEVENSIAVKSHALTLLNTVMQEASSNVMERLKPEVFETIVKVLRCGTTQQGMKAGLHALLSACHWGRNRIMMVESGAVFELVEIEFVTNEKRSTELTMMILFHLCSCAEGRAQFLSHRGAVALLTERMFTVSHAVDDRAVGILSLVLSSFSATHVVLQEMLEFGTVSKLCMLVQTGDHHHGTCQRKHTAREMLKSHAHVWIKHSPPACISERHRSLLLCEVK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2037 416 SUPERFAMILY RING/U-box 3 81 - -
Aed2g2037 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 404 - -
Aed2g2037 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Aed2g2037 416 SUPERFAMILY ARM repeat 101 373 IPR016024 -
Aed2g2037 416 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Aed2g2037 416 CDD RING-Ubox_PUB 10 52 IPR045210 -
Aed2g2037 416 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Aed2g2037 416 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Aed2g2037 416 Gene3D - 94 393 IPR011989 -
Aed2g2037 416 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2037 Aed-Chr2 24775822 24777072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2037 2 396 U-box Gene Family AT3G11840 40.359 9.10e-99 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2037 - - lja:Lj0g3v0014579.1 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2037 2 24775822 24777072 Aed2g2037 2 24775822 24777072 ECH