Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2010 ATGTCGTCGTCGATAAACCGCTACTCACCGGAAACGAGACTATACTGGAGCAGCGAGCAACAACAGCAACAAGCCGCCACGTGGCTTGGCAATTCTTCTCAAACTCCTCGTTTCAACCTGAACGTGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTTGTCGTTCCGGAGAACGGTAAGTTGTTGGCGGAAGAAGAGGAGAAGGAAGCGATGTTCGAGAAGCCGTTGACGCCGAGCGACGTGGGGAAGCTGAACCGCTTGGTGATCCCGAAACAGCACGCGGAGAAGCACTTCCCTCTCGACTCGTCCTCGTCCGGCGAGTCGGCGAAGGGGCTCCTGCTGAGTTTCGAGGACGAGTCAGGGAAGTGCTGGCGATTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTAACTAAAGGCTGGAGCCGTTACGTCAAAGACAAACGCCTCCACGCTGGCGACGTCGTTTTGTTTCACAGACACCGCTCCCACCCTCAACGCTTCTTCATCACCTGCACCCGCCGCCAGCCCAACCCCACCCCCCCTCGCACGTTACCACTACCACTTCGCCCTCCTTCTACTCTGCGCACCCTTATCCTACGCCTCACCTCCCTTTCCCATACCAACCTCACTCTCTTCATGCACCACCTGCACCAGGTGGAGGGTCCCAAGGACAGAACGAAACGACACCGGGAAGTGGCAGCAGGGTGCTGA 720 0.5722 MSSSINRYSPETRLYWSSEQQQQQAATWLGNSSQTPRFNLNVEEEEEEEEEEVVVPENGKLLAEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLDSSSSGESAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLFHRHRSHPQRFFITCTRRQPNPTPPRTLPLPLRPPSTLRTLILRLTSLSHTNLTLFMHHLHQVEGPKDRTKRHREVAAGC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2010 239 CDD B3_DNA 71 165 IPR003340 GO:0003677
Aed2g2010 239 Gene3D - 62 183 IPR015300 -
Aed2g2010 239 Pfam B3 DNA binding domain 72 176 IPR003340 GO:0003677
Aed2g2010 239 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 20 180 - -
Aed2g2010 239 MobiDBLite consensus disorder prediction 25 39 - -
Aed2g2010 239 ProSiteProfiles B3 DNA-binding domain profile. 72 178 IPR003340 GO:0003677
Aed2g2010 239 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 180 IPR044800 GO:0003700
Aed2g2010 239 SUPERFAMILY DNA-binding pseudobarrel domain 69 179 IPR015300 -
Aed2g2010 239 SMART B3_2 72 177 IPR003340 GO:0003677
Aed2g2010 239 MobiDBLite consensus disorder prediction 25 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2010 Aed-Chr2 24527312 24530084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2010 66 177 RAV Transcription Factor Family AT2G36080 78.571 5.01e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed2g2010 B3 8.2e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2010 - - var:108328437 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2010 2 24527312 24530084 Aed2g2010 2 24527312 24530084 ECH
Aed2g2010 2 24527312 24530084 Aed8g0572 8 4898746 4902498 PCT