Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2004 ATGAATGAATATACCGATGCAATGCAACTCACACTTTGCAGTTTGCCACACTGCATTGAATTCCATGGCGGCCGACTGTCCTTCTACACCACAGAGAAAGCATTATCAGAGGCTTTCTCCAATTACGGGCAAGTTATTGAAGCCAAAATTGTAACAGATAGGGTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCACAAGACGAGGCTGAGAATGCCATGGAAGATATGAAAGGAAAGGCATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAGCCCAATATCAACACTCGTGGTGAAATTCCAATTGCCAGAGGACCTCCTGAACCAACACCAACACAAACAGCAACACCAGATACTTGA 375 0.432 MNEYTDAMQLTLCSLPHCIEFHGGRLSFYTTEKALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAMEDMKGKALNGRVIFVDYAKPNINTRGEIPIARGPPEPTPTQTATPDT 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2004 124 MobiDBLite consensus disorder prediction 102 124 - -
Aed2g2004 124 PANTHER TRANSFORMER-2-RELATED 24 116 - -
Aed2g2004 124 SUPERFAMILY RNA-binding domain, RBD 24 110 IPR035979 GO:0003676
Aed2g2004 124 Gene3D - 23 113 IPR012677 -
Aed2g2004 124 SMART rrm1_1 24 93 IPR000504 GO:0003723
Aed2g2004 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 90 IPR000504 GO:0003723
Aed2g2004 124 MobiDBLite consensus disorder prediction 109 124 - -
Aed2g2004 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 97 IPR000504 GO:0003723
Aed2g2004 124 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 24 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2004 Aed-Chr2 24490700 24492307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2004 12 94 Eukaryotic Initiation Factors Gene Family AT2G23350 32.530 2.85e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2004 - - gmx:100527079 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2004 2 24490700 24492307 Aed2g2004 2 24490700 24492307 ECH