Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1998 ATGGAAATTGAATATATGGCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGTTGATTTCGTTCTATCTTCACAATAAGCTTGAAGGAGAAAGGGAAGATCACATGAATCGAGTTATTCCAGTCGTTGATATTTACGACTACAATCCAACCCAACTCCCACAAATATCAGGAGAGGCGAGTATGAGAGACACGGAGCAGTGGTTTTTCTTCATACCGAGGCAAGAGAGTGAAGCGAGAGGAGGGAGACCTAAGCGTCTCACAAGTACAGGGTACTGGAAGGCTACAGGGTCACCAAATCATGTTTATTCTTCTGATAATCGCATCATTGGCATTAAGAGGACTATGGTCTTCTACAGTGGAAGAGCTCCAAATGGAACCAAAACCGATTGGAAGATGAACGAATACACCGCCATCAAACCTGAACCATCATCATCATCATCCTCTAATTCCAACAAGCTCTCAGTTCCCACGTTAAGGAAGGAATTCAGTTTATGCCGAGTGTACAAAAAATCAAAGTGTTTGAGGGCATTTGACAGACGACCACCGGCAAGGAGGCATGAGAATCAGAATCAGAATAATATAATGGTGGAGAGAAGAAGAAGTGCAACGTGTTCACCAGCAGAGAGTTCATCCTCCGGAGATCTTGACCAAGACCAAACCCCTCTTCACGGTACTGAGGAAGTCACCCAAATGGATGTTGACCCTTTTTTGGATTGGGAGAAAGTCGATTTGTTCTTGGGATCTGAACCATGA 756 0.4418 MEIEYMAPGYRFYPTEEELISFYLHNKLEGEREDHMNRVIPVVDIYDYNPTQLPQISGEASMRDTEQWFFFIPRQESEARGGRPKRLTSTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKPEPSSSSSSNSNKLSVPTLRKEFSLCRVYKKSKCLRAFDRRPPARRHENQNQNNIMVERRRSATCSPAESSSSGDLDQDQTPLHGTEEVTQMDVDPFLDWEKVDLFLGSEP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1998 251 MobiDBLite consensus disorder prediction 180 235 - -
Aed2g1998 251 MobiDBLite consensus disorder prediction 188 227 - -
Aed2g1998 251 Pfam No apical meristem (NAM) protein 8 137 IPR003441 GO:0003677|GO:0006355
Aed2g1998 251 Gene3D NAC domain 15 175 IPR036093 GO:0003677|GO:0006355
Aed2g1998 251 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 243 - -
Aed2g1998 251 ProSiteProfiles NAC domain profile. 6 171 IPR003441 GO:0003677|GO:0006355
Aed2g1998 251 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 243 - -
Aed2g1998 251 SUPERFAMILY NAC domain 4 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1998 Aed-Chr2 24445475 24446580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1998 9 243 NAC Transcription Factor Family AT5G22380 50.000 9.11e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed2g1998 NAM 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1998 - - gmx:100800056 392.119