Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1985 ATGGAAAAAATGCCTGAGACAAAGCAGACAGATATCATGGCCCAAAATCCAGAGTCATCAGCGGGGATCTGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGAAGGGGACAATGATCAAGAGGAGACATTGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGATGAGGAAGAAGAGGAGGAGGAAGAAGAAGAAGATGAAGATGAAGAAGAGACTAAGCCCTCGGATGATGAAGATCAGACAAGAGTGGCAGACACTGAGGATGAAGTAGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCTGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGGGTCTTTTGTAAATCTGTAGGAGAAGTTTCTGAGGTCAGGATAATGAAGGGAAAAGAATCCGGTGAAGCAAACGGCTTTGCTTTTGTGACCTTTAAGACAAAGGAATTGGCATCTAAAGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGTTAAGCACAAGTTGTTCATTGGTAATGTTCCCAGATATTGGACTGAAGGAGATATGAAGAAAGTTGTTGCAGAGATTGGCCCTGGAGCAATTTCTGTGGAACTGTTGAAGATAAAATCAGTGTATGTAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTTCTGCTAAAGCCGGGCAAGAAAAGAGCAGATTTGGTTTTGTGCATTTTTCTGAAAGGTCAAGTGCCATGAAGGCTTTGAAGAACACGGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCGAAGCCACAAGCAAATTCACAGAAGCCAGCTTTACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGGTGGTGGTGCTGTAGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTGATGTATGGTCCCGGACCAACCCATGCTGGCATGGCAATGATGCCGATGATTTTATCAGATGGAAGAATTGGATATATAGTGCAACAGCCAGGATTTCAACAGCCAGGGTTTCAACAGCCTGCTCCAATGCAAGAATCCCGACATGGGAGGAGTGGTGGTGGTAGCACAAGTGTTGGGAAACGCAGTAATGATAATAACCGCAATCGTGGTAATGGTCATGGCCATGGCCGAGGCCGATATCATCCCTACTAA 1296 0.439 MEKMPETKQTDIMAQNPESSAGICEPEKPTDSDEQVDFEGDNDQEETLEEEVEYEEVEEEEEVDEEEEEEEEEEDEDEEETKPSDDEDQTRVADTEDEVEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLRVFCKSVGEVSEVRIMKGKESGEANGFAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQVKHKLFIGNVPRYWTEGDMKKVVAEIGPGAISVELLKIKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKAGQEKSRFGFVHFSERSSAMKALKNTEKYEIDGQTLECSLAKPQANSQKPALLPTYPPHLGYGMGGGAVGAGYGAAGFAQPLMYGPGPTHAGMAMMPMILSDGRIGYIVQQPGFQQPGFQQPAPMQESRHGRSGGGSTSVGKRSNDNNRNRGNGHGHGRGRYHPY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1985 431 MobiDBLite consensus disorder prediction 36 84 - -
Aed2g1985 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 187 IPR000504 GO:0003723
Aed2g1985 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 302 IPR000504 GO:0003723
Aed2g1985 431 Gene3D - 31 196 IPR012677 -
Aed2g1985 431 Gene3D - 224 346 IPR012677 -
Aed2g1985 431 PANTHER GEO13361P1-RELATED 229 429 - -
Aed2g1985 431 Coils Coil 49 82 - -
Aed2g1985 431 SUPERFAMILY RNA-binding domain, RBD 230 316 IPR035979 GO:0003676
Aed2g1985 431 SMART rrm1_1 116 189 IPR000504 GO:0003723
Aed2g1985 431 SMART rrm1_1 232 305 IPR000504 GO:0003723
Aed2g1985 431 MobiDBLite consensus disorder prediction 85 100 - -
Aed2g1985 431 CDD RRM_SF 117 189 - -
Aed2g1985 431 PANTHER - 16 229 - -
Aed2g1985 431 SUPERFAMILY RNA-binding domain, RBD 112 220 IPR035979 GO:0003676
Aed2g1985 431 MobiDBLite consensus disorder prediction 1 100 - -
Aed2g1985 431 MobiDBLite consensus disorder prediction 380 413 - -
Aed2g1985 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Aed2g1985 431 PANTHER - 229 429 - -
Aed2g1985 431 SMART rrm2_1 232 305 IPR003954 GO:0003676
Aed2g1985 431 SMART rrm2_1 116 189 IPR003954 GO:0003676
Aed2g1985 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Aed2g1985 431 MobiDBLite consensus disorder prediction 380 431 - -
Aed2g1985 431 PANTHER GEO13361P1-RELATED 16 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1985 Aed-Chr2 24346291 24350669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1985 115 405 Eukaryotic Initiation Factors Gene Family AT2G23350 26.246 1.17e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1985 K13161 - aof:109819746 336.65