Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1978 ATGAGTAAGCTACAAAGTGATGCACTGAGAGAGGCAATTTCGCAGGTGGTTAGTAATTCAAAGGAGAAAAATCGTAAATTCACGGAGACTATTGAGCTGCAAATTGGATTGAAGAACTATGATCCTCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCCCACATTCCTCGCCCTAAGATGAAGATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGGCGGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCACTGAAGAAACTCAATAAAAACAAAAAACTTGTGAAGAAGCTTGCCAAGAAGTATCATGCTTTTCTAGCTTCTGAAGCTGTTATCAAGCAAATTCCCCGGCTTCTGGGTCCTGGTTTAAATAAGGCAGGCAAGTTGCTTCCCCTGCTATTCCCTCTTGTTTGGTTCGGTAAATTTCCAACATTAGTGACTCATCAAGAATCCTTGGAGTCAAAAGTTAATGAAACAAAGGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTATGGGTGTTGCCGTTGGAAATTGCACAATGGAGGAGAAGCAGATATTCCAGAATGTACAACTCAGTGTCAATTTCCTTGTTTCATTATTGAAGAAAAACTGGCAAAACGTGAGGTGCTTGTACCTGAAGAATACTATGGGGAGCGCAATCCGCGTATTTTAA 690 0.413 MSKLQSDALREAISQVVSNSKEKNRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKLLPLLFPLVWFGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKNTMGSAIRVF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1978 229 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 227 - -
Aed2g1978 229 CDD Ribosomal_L1 9 228 IPR028364 -
Aed2g1978 229 SUPERFAMILY Ribosomal protein L1 3 229 IPR023674 -
Aed2g1978 229 Gene3D - 1 119 - -
Aed2g1978 229 Gene3D - 150 227 - -
Aed2g1978 229 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 229 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Aed2g1978 229 Pfam Ribosomal protein L1p/L10e family 21 223 IPR028364 -
Aed2g1978 229 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1978 Aed-Chr2 24294256 24297181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1978 1 229 Cytoplasmic Ribosomal Protein Gene Family AT5G22440 83.478 1.90e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1978 K02865 - gmx:100527763 392.504