Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1975 ATGATGACGGAGTTGAAAGAGATTCAGAGACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCTGTCACCGGCCACGCCGGTATCCCACTCGTCTTCGCTTCCTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCTTCCGGCCTCTGGGCCTGCAAGGCGGTTTTAGATGAAACGCACACACGAACTGTTCGATCTTGTGCTTGGTCACCGTCGGGGAAACTGTTGGCCACTGGAAGCTTCGATGCCACCACCGCCATTTGGGAGAATGTTGGTGGTGATTTTGAGTGTGTTTCTACTTTGGAGGGACATGAAAATGAAGTGAAGAGTGTGTCTTGGAATGCGGCTGGGACATTGCTTGCAACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTGCTGCCCGGGAATGAGTTTGAGTGTGCGTCAGTGCTTCAAGGACACGCACAGGATGTGAAAATGGTGAAGTGGCATCCCACAGAGGATGTTTTGTTTTCATGTAGCTATGATAATAGTGTTAAGGTTTGGGCGGATGAAGGTGATAGTGATGATTGGCAGTGTGTTCAAACGCTTGGGCAACCCAATAAGTACTACTTTTTGACCTCTCCCATCACCTCCAATTTTGAAACTTCTTGGTTTTCTTCACTTTTAGCCATGATTGCCTTTTCCATATTTTATGGAATTGGTCATACTTCCACTGTTTGGGCCCTCTCCTTCAATGTGAGCGGCAACAAAATGGTTACGTGTAGTGATGATCTTACACTGAAGGTATGGGAAACAGAAAGTGTAGGGATGCAATCTGGTGGTGGATTTGCACCTTGGAGACATCTTTGTACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGCTCATTGGTCAAGATGCACCCTATCTTATTTAATTTTTGTTTATATAAATCTGATATTTCTGTGTCCTTCACTGTGCTGGTATGATAGAGAAGGTATCTTTGCCAGTGGAGCCGCAGATAATGCTATACGGCTTTTTGTGGATGACAATGAAAGTCAGGTTGGTGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGATATAAATTCTGTGCAGTGGAGCCCCGGGGAGAAGCCGCTACTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTGTGGGAGTTGATATCATAA 1203 0.4655 MMTELKEIQRLEGHTDRVWSLDWNPVTGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACKAVLDETHTRTVRSCAWSPSGKLLATGSFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNAAGTLLATCSRDKSVWIWEVLPGNEFECASVLQGHAQDVKMVKWHPTEDVLFSCSYDNSVKVWADEGDSDDWQCVQTLGQPNKYYFLTSPITSNFETSWFSSLLAMIAFSIFYGIGHTSTVWALSFNVSGNKMVTCSDDLTLKVWETESVGMQSGGGFAPWRHLCTLTGYHDRTIFSAHWSRCTLSYLIFVYINLIFLCPSLCWYDREGIFASGAADNAIRLFVDDNESQVGGPLYKLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWELIS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1975 400 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 3 400 IPR028608 GO:0016226|GO:0097361
Aed2g1975 400 Gene3D - 34 400 IPR015943 GO:0005515
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 270 IPR001680 GO:0005515
Aed2g1975 400 PANTHER WD40 PROTEIN CIAO1 326 399 IPR028608 GO:0016226|GO:0097361
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 141 IPR001680 GO:0005515
Aed2g1975 400 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 3 202 - -
Aed2g1975 400 CDD WD40 7 397 - -
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 49 - -
Aed2g1975 400 SUPERFAMILY WD40 repeat-like 5 398 IPR036322 GO:0005515
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 400 IPR001680 GO:0005515
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 270 - -
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 64 96 IPR001680 GO:0005515
Aed2g1975 400 PANTHER WD40 PROTEIN CIAO1 235 303 IPR028608 GO:0016226|GO:0097361
Aed2g1975 400 SMART WD40_4 101 140 IPR001680 GO:0005515
Aed2g1975 400 SMART WD40_4 226 267 IPR001680 GO:0005515
Aed2g1975 400 SMART WD40_4 56 96 IPR001680 GO:0005515
Aed2g1975 400 SMART WD40_4 146 185 IPR001680 GO:0005515
Aed2g1975 400 SMART WD40_4 4 49 IPR001680 GO:0005515
Aed2g1975 400 SMART WD40_4 357 397 IPR001680 GO:0005515
Aed2g1975 400 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 235 303 - -
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 64 96 - -
Aed2g1975 400 PANTHER WD40 PROTEIN CIAO1 3 202 IPR028608 GO:0016226|GO:0097361
Aed2g1975 400 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 49 IPR001680 GO:0005515
Aed2g1975 400 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 326 399 - -
Aed2g1975 400 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Aed2g1975 400 PRINTS G protein beta WD-40 repeat signature 36 50 IPR020472 -
Aed2g1975 400 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Aed2g1975 400 Pfam WD domain, G-beta repeat 365 396 IPR001680 GO:0005515
Aed2g1975 400 Pfam WD domain, G-beta repeat 103 139 IPR001680 GO:0005515
Aed2g1975 400 Pfam WD domain, G-beta repeat 7 48 IPR001680 GO:0005515
Aed2g1975 400 Pfam WD domain, G-beta repeat 60 95 IPR001680 GO:0005515
Aed2g1975 400 Pfam WD domain, G-beta repeat 148 184 IPR001680 GO:0005515
Aed2g1975 400 Pfam WD domain, G-beta repeat 236 266 IPR001680 GO:0005515
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 153 184 - -
Aed2g1975 400 ProSitePatterns Trp-Asp (WD) repeats signature. 384 398 IPR019775 -
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 364 400 - -
Aed2g1975 400 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 141 - -
Aed2g1975 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 153 184 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1975 Aed-Chr2 24282266 24287710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1975 79 267 U-box Gene Family AT2G33340 26.500 2.12e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1975 K24730 - gmx:100778826 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1975 2 24282266 24287710 Aed2g1975 2 24282266 24287710 ECH