Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1958 ATGAAGGTCATCGCCGCCTACTTGCTCGCCGTCTTGGGAGGCAACGCCTCCCCTTCCGCCGATGACCTAAGGGACATCCTTGGCTCCGTTGGAGCTGATGTGAATGATGACAATATCAGCAGCTTCTTGACTGAAGTTAAGGGCAAAGACATCGCGGAGCTTCTCGCCGCCGGTAGGGAAAAGTTAGCCTCCGTACCTTCTGGTGGCGGCGGCGCCGTTGCCGTGTCAGCCGCTTCCGGCGGTGGCGCTGCTGCTCCGGCTGCTGCCGAATCTAAGGAGGAAAAGGTTGAAGAGAAGGAGGAGTCAGATGACGATATGGGATTCAGTCTCTTCGATTAA 339 0.5693 MKVIAAYLLAVLGGNASPSADDLRDILGSVGADVNDDNISSFLTEVKGKDIAELLAAGREKLASVPSGGGGAVAVSAASGGGAAAPAAAESKEEKVEEKEESDDDMGFSLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1958 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Aed2g1958 112 MobiDBLite consensus disorder prediction 84 112 - -
Aed2g1958 112 CDD Ribosomal_P2 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Aed2g1958 112 Hamap 50S ribosomal protein L12 [rpl12]. 2 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Aed2g1958 112 Pfam 60s Acidic ribosomal protein 17 111 - -
Aed2g1958 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 112 - -
Aed2g1958 112 MobiDBLite consensus disorder prediction 97 112 - -
Aed2g1958 112 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1958 Aed-Chr2 24177554 24178530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1958 1 112 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.643 2.62e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1958 K02943 - gmx:100787024 132.88