Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1948 ATGCGTTCCAGCAACGGTGCATCAAGCAGCAGAACCTCTAACGGCAATACAGGGCGCCACCCTGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGCAAATGGGTTTCTGAAATCCGTGAGCCCAAAAAACCCAACAGGATTTGGTTAGGAACATTTGTCACCCCTGAAATGGCTGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGTAAGGATGCCGAACTCAACTTCCCTAACTCGGCTTCCTCCCTTCCTGTCCCTGCATCATCTGCAGCTCGCGACATTCAGATGGCTGCAGCTAGTGCTGCAGCTGCTGTCGGAGCAGCGAATGATGCACTGGAAGGAAGCCGAGGAGGAGGGAATGTTTCAGTTTCGTTGGCACAAGAGTTTTCAGAGGGAAACATAAACCACTTTGTGGATGAGGACTTGTTCTTTGACATGCCGAATATTCTTGTCAACATGGCTGAGGGAATGCTACTGAGCCCTCCTCGTTTTGACAATTTTGCTGCTACCGACTATGACTACATGGATATTGAAGATCCTAACCTCTGGGGGTTCCCTAATTACTAG 573 0.5026 MRSSNGASSSRTSNGNTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFVTPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAARDIQMAAASAAAAVGAANDALEGSRGGGNVSVSLAQEFSEGNINHFVDEDLFFDMPNILVNMAEGMLLSPPRFDNFAATDYDYMDIEDPNLWGFPNY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1948 190 MobiDBLite consensus disorder prediction 1 19 - -
Aed2g1948 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 188 - -
Aed2g1948 190 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Aed2g1948 190 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Aed2g1948 190 MobiDBLite consensus disorder prediction 1 32 - -
Aed2g1948 190 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Aed2g1948 190 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Aed2g1948 190 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Aed2g1948 190 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Aed2g1948 190 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Aed2g1948 190 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Aed2g1948 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 4 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1948 Aed-Chr2 24051898 24052470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1948 12 188 AP2-EREBP Transcription Factor Family AT2G36450 64.641 3.18e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed2g1948 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1948 - - gmx:100813781 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1948 2 24051898 24052470 Aed2g1948 2 24051898 24052470 ECH
Aed2g1948 2 24051898 24052470 Aed8g0514 8 4397478 4398296 PCT
Aed8g0515 8 4419112 4419708 Aed2g1948 2 24051898 24052470 PCT