Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1947 ATGGAAATGGAGGACCATCATCATCATCAACATCATCACCACCATCATCATGAGCAGCAGCAGCAGCAGCAGCAACAGTATGGCATCACTGATCTGAGGCAACTCATGAACGGGCCTCGCTCGGCTCATTTCCCGTCCTCCATGCCGCCGCAGCCCAAGGCGGAGCTGTTCCCTGGCCAGCTGGCGGCGACACAGCAGCACTACGAGATGATGATGTTTGGTCGTCAAGTAGCCGACATAATGCCTCGTTGTCTTCATGACTTCGCCTCCACCGATTCCGGCACCAATAACATCGGCGTTGCCACTCCCACCACCACCACTAGTGTCTCCACTCCTCCGCTTAGTTGCTTAGAGGCCGAGACCGCAGGATGCATCGGTGGAGACGCATCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTCCTTGAGATCAGATCTCGCCTCGACTCCAAATTCAAAGAGGCTAATCAAAAAGGCCCCTTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGTTATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGAAGGAAAAGCAGGAAGACAAGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCTTCGGTGCCAGAAACCAATTTTGGCAGTGCCAGCCTTCGTTTCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGACAGCCTCAGCCTCACCAACTCCACTGATTTGGACACGTCATCATCGGATGACAATGATCAGAACAGCACTGGGGGGCTCAAGGACAATGACTCCGTGGTGGAGAAGAGGAAGAAGAGGGTAATGAGTGGAAGAAGCTGGAAGGTGAAGATTAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACAAAGACACTGGAACAGAAGGAAAAGGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGCAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTCTAATGGAGGCTTTGCACAAACTAACAGGAAATGAGGTAATAAAGAGTACTCATTCTCCTGAGGGTCTAATATTGGTAACTGGAATTCAAAACCAAAGTGAAAACCAGAATGAAGATGGGAGTGAAATACTAAATAGCACTACTGCCAGAGGTGCTGAAAGCTGGCCAGAATCCGAGGTTACAAAGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGGTTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTGGTGTTCAAAGAGAAATGGGAAAGTATCAGCAGCAGCAACTATGCAAGGAGTGCCAGTGCCAAGGAAGGAAGCAAGAAGCGCAAGGAAGACTCAAGAGGTTGTTTCTATTTCGATAACAGTGACCAGTCTTCTCTGTATAACCAAGGTGGTGCCTATTGTGATATCAATATTGATCAAAGGCACGAGACTCATGGGGGGAGGCTGCAGCAAACAAATGATCATGGTTCTTCACCTTCCAATTCAAATGTTGGAAATGCAGTTGCGCCTGATAACAACTGCTTTCCCTTCTTGATGACTGAGGGTGGAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAGCCAAAACCAGTGA 1797 0.4691 MEMEDHHHHQHHHHHHHEQQQQQQQQYGITDLRQLMNGPRSAHFPSSMPPQPKAELFPGQLAATQQHYEMMMFGRQVADIMPRCLHDFASTDSGTNNIGVATPTTTTSVSTPPLSCLEAETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSASLRFHNPSQTNQEMFQSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGGLKDNDSVVEKRKKRVMSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALHKLTGNEVIKSTHSPEGLILVTGIQNQSENQNEDGSEILNSTTARGAESWPESEVTKLQQLRAEMETRYMQSGCSEEVMWEEIATKMACFGYERSALVFKEKWESISSSNYARSASAKEGSKKRKEDSRGCFYFDNSDQSSLYNQGGAYCDINIDQRHETHGGRLQQTNDHGSSPSNSNVGNAVAPDNNCFPFLMTEGGNLWENYSLKVNKASQNQ 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1947 598 PANTHER - 38 589 - -
Aed2g1947 598 SMART sant 130 193 IPR001005 -
Aed2g1947 598 SMART sant 428 491 IPR001005 -
Aed2g1947 598 Pfam Myb/SANT-like DNA-binding domain 133 219 IPR044822 -
Aed2g1947 598 Pfam Myb/SANT-like DNA-binding domain 431 520 IPR044822 -
Aed2g1947 598 ProSiteProfiles Myb-like domain profile. 126 191 IPR001005 -
Aed2g1947 598 Coils Coil 321 348 - -
Aed2g1947 598 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 38 589 - -
Aed2g1947 598 MobiDBLite consensus disorder prediction 248 297 - -
Aed2g1947 598 CDD GT1 432 490 - -
Aed2g1947 598 CDD GT1 133 198 - -
Aed2g1947 598 MobiDBLite consensus disorder prediction 248 287 - -
Aed2g1947 598 MobiDBLite consensus disorder prediction 1 26 - -
Aed2g1947 598 MobiDBLite consensus disorder prediction 548 563 - -
Aed2g1947 598 Gene3D - 134 196 - -
Aed2g1947 598 Gene3D - 432 495 - -
Aed2g1947 598 MobiDBLite consensus disorder prediction 544 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1947 Aed-Chr2 24035792 24039227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1947 21 593 Trihelix Transcription Factor Family AT5G03680 45.351 2.32e-144 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aed2g1947 Myb_DNA-bind_4 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1947 - - gmx:100813245 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1947 2 24035792 24039227 Aed2g1947 2 24035792 24039227 ECH
Aed2g1947 2 24035792 24039227 Aed8g0512 8 4374892 4378758 PCT