Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1944 ATGAGCATGGAGAGCACGCGCAGATCAAGAGAACCGGGTCCCAAGAAGCCCCGATTGATCGAGGAATTCAGCGCCCAACAGTTACCTCAACGACATCAAGGTACTGCGTTGGCGTCTACGAGGTTTCGAGCTAATGACGGAGACGGCGGCGGGTACCAGCCGCAGCCTCCGCCGCACCAAGAGCTTGTGACTCAGTATAGGACTGCGCTTGCTGAGCTCACTTTCAATTCGAAGCCTATAATTACCAACTTGACTATTATTGCCGGAGAGAATCAGTCTGCTGCCAAGGCTATTGCTGCCGCTGTTTGTGCTAACATTCTCGAGGTTCCAAGTGATCAAAAACTACCATCTCTTTATCTCTTAGACAGTATCGTTAAGAACATCGGGCGGGATTATATAAAATCTTTTGCCATCAAACTACCCGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTTGTGTTCACACAAGTATGAGACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGGCAATGGTTCAGCATCAGTATCTGCTACAGTCAGGAGTGATTTACAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGCAAAGGAGTAGTTAATGATGTGACTGGAGCTGTTTCAAACTCAAATGAGGATTTGGAGAGGCCAGATAGAGCTTTGGGTGCATCACGACCGTGGCTGGATCCTAGGCTTAACATGCTTAATAATCAGCAGAAACATAGAGATGCATTTAATGATTCTGTTCCCGAAAAGAGCATTGATGGATCATACGGAGGCAGTGAATATAGTTCTTCCATTTCAAGTAATTTGGTATCAGGGGCTGGAAGAACTGGAAGTAAGCTCATTGATTTAGGTCATGACAAAACATGGTTCAAAACAGATGGTGGTGATGCAGATACCGCATTTGGGCAAAAAAATGGTTTCAGTCTTAAGCGCAGTTTTCCAAATCATGAAGCACCAAAGTCCATGAATTTGGATGCACATCGTCAGCCCAGACAAAGCATAACTAACCCGTGGAGCAATGTAATGTCAGGTAACTGGAAAAATTCTGAAGAAGAGGAGTTCACATGGGATGAGATGAACAATGATTTGACTGACCATGGACCCAATGTATCAAACAATTTGAGCACAGACTCATGGATGGCAGATGATGAAAATTTGGAAGGTGAAGATCACCTCCAAATCACGCGCCCTTTTGGGAGAAAGGTTGATAGAGAAATATCCACTGTTAGGAAACAACTACCTGGTGTAGGGGGTCATCCACCATCATCATGGCAATTTCAGAAGCACCAATCAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGAAGGAGTTGTGTCCACTCTTGGTGGCTTACCAGCCAACACAAGTTCTTTGGCTGTCAAGAAGGGGAACCAATCCTTTTTGTCGAATGAAGTAGTTGGAATGACCAAATTTGTGGGACAACAATTTGATTCTGGGGAAACTGAATCCCCTTATGGGCAGTCACCTCTGCGACAACAGTCTCCATTGCTGCCAGTAACAGTACACCACCCTCATTCAATGCAAAATTTGGATGTGCACGAATTGCCTCAGAATCTCAAAACCTCTCAATTTTTGGGAGGTCAGATAAGTCAGCATATTAGAGATCGCTCACCTACCCTTCATCCCATTGTTCAGGTTGGTAACCTGGGAAGATCACAGGAAAAGGGCATGCAGGGACCATTATCTTCCGTGACTTCTTTTCAAACAAAGCTTCAGCAACTGCAGCTGGACCCATCTCAGACAGAAGTTACTGCTAAAACTAAGCTGCCTCAGTCTAAAGTTTGTTTAACCAGTGAAACTTCAGAACAGTTGGCCACAAATAATTTGTCAGCTGCACCTATTAAGAGTGGAATCGTCCGCAAGAAATCAATTACCAATAATCTGGATCCAAGGAAGCATCCATCTCAGACTGGGGTTCAGCCTACTCAGTCAGGTAGGGCTACCACATTAATTTCTTCAGGGTCTGCAGTGGCATCACCATCTTTATTAGATCCTCTGCATAATGATACATCTACACTGCAAAAAAAAACTAAAGGAAAGGCTGGACAACGACCACAAAAACTTTCTACTCAACCGCCTGCTTCCTCTAATGTGAGCAGTTCCTCAGCTCCAACCTTAAATGCTGCTAAAAATAATAAACTAAATCCATTTGCAAGCCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTACAGAAACAGAATCACTGACCACAGCAGCAAGTGAGTCACCGAAGGGATCCAAAGATGAAACTGAAATCATTACAACCAGTTGTTGTTTACCAGTTACATCAATTTCTGGTTCTGCAGCTGTCCCAGTATCGTCTTGTGGAGATGAGGTAGATGCTGCCACTAAAACTGCTCTTGCCGCACCTCAATCAACTAGCAAGGAAATCAGAAATCTCATTGGCCTTGATTTTAGACCTAATGTAATTCGAGAATTCCATCCACCTGTAATTAGGGAATTATGGGATGATTTCCCTCATCATTGTGAAATTTGCGGTGTTAGGATCAAACAAGAACACTTTAATAAACACTTGGAGTGGCATGACACAAGAGAACATGATCCAATTAAGGCATCAAGAAGTTGGTATGCTAAGTCAACTGATTGGATTGCTGGCAAGGCAGAATATTCGTCTGAGTCTGAGTCTGGGTTTAGTGATTCTGTTGATGTACATGACCAAAAATCAGACAGCAGTCAATTGGATACGATGGTTCTTGCAGATGAAAACCAGTGTCTGTGTGTATTGTGTGGTGAGATATTTGAAGATGTGTACTGTCATGAAAGGAACGAGTGGATGTTCAAAGGAGCCGTTTACATGAACTATTCAGATATAAACAGTGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTTTCACAGAACTCAATCGTCACCAATATGCATTTGAACTATGGCGTAGAAGCTTACACAGGGTTTAACAAAGAAAGAGAGGAGAAGCAGTCTCTGCAGGAAGCGGCGCTGGTGAGGGAGTGCTGGGCAGAGTGGGGCAGTGGGTAG 3165 0.4382 MSMESTRRSREPGPKKPRLIEEFSAQQLPQRHQGTALASTRFRANDGDGGGYQPQPPPHQELVTQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAAAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKSFAIKLPEVFCKAYRQVDPCVHTSMRHLFGTWKGVFPPQCLQMIEKELGFAPAGNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVNDVTGAVSNSNEDLERPDRALGASRPWLDPRLNMLNNQQKHRDAFNDSVPEKSIDGSYGGSEYSSSISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTAFGQKNGFSLKRSFPNHEAPKSMNLDAHRQPRQSITNPWSNVMSGNWKNSEEEEFTWDEMNNDLTDHGPNVSNNLSTDSWMADDENLEGEDHLQITRPFGRKVDREISTVRKQLPGVGGHPPSSWQFQKHQSIDKLNLKPGYSEGVVSTLGGLPANTSSLAVKKGNQSFLSNEVVGMTKFVGQQFDSGETESPYGQSPLRQQSPLLPVTVHHPHSMQNLDVHELPQNLKTSQFLGGQISQHIRDRSPTLHPIVQVGNLGRSQEKGMQGPLSSVTSFQTKLQQLQLDPSQTEVTAKTKLPQSKVCLTSETSEQLATNNLSAAPIKSGIVRKKSITNNLDPRKHPSQTGVQPTQSGRATTLISSGSAVASPSLLDPLHNDTSTLQKKTKGKAGQRPQKLSTQPPASSNVSSSSAPTLNAAKNNKLNPFASLLSSLVAKGLISTETESLTTAASESPKGSKDETEIITTSCCLPVTSISGSAAVPVSSCGDEVDAATKTALAAPQSTSKEIRNLIGLDFRPNVIREFHPPVIRELWDDFPHHCEICGVRIKQEHFNKHLEWHDTREHDPIKASRSWYAKSTDWIAGKAEYSSESESGFSDSVDVHDQKSDSSQLDTMVLADENQCLCVLCGEIFEDVYCHERNEWMFKGAVYMNYSDINSEMESRNVGPIIHAKCFSQNSIVTNMHLNYGVEAYTGFNKEREEKQSLQEAALVRECWAEWGSG 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1944 1054 MobiDBLite consensus disorder prediction 195 210 - -
Aed2g1944 1054 ProSiteProfiles CID domain profile. 58 186 IPR006569 -
Aed2g1944 1054 SUPERFAMILY ENTH/VHS domain 58 186 IPR008942 -
Aed2g1944 1054 MobiDBLite consensus disorder prediction 667 752 - -
Aed2g1944 1054 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 7 1015 - -
Aed2g1944 1054 SMART 558neu5 61 183 IPR006569 -
Aed2g1944 1054 MobiDBLite consensus disorder prediction 672 752 - -
Aed2g1944 1054 MobiDBLite consensus disorder prediction 1 18 - -
Aed2g1944 1054 CDD CID_Pcf11 63 173 - -
Aed2g1944 1054 MobiDBLite consensus disorder prediction 195 258 - -
Aed2g1944 1054 Gene3D - 55 183 IPR008942 -
Aed2g1944 1054 MobiDBLite consensus disorder prediction 274 294 - -
Aed2g1944 1054 Pfam CID domain 68 176 IPR006569 -
Aed2g1944 1054 MobiDBLite consensus disorder prediction 1 59 - -
Aed2g1944 1054 MobiDBLite consensus disorder prediction 26 40 - -
Aed2g1944 1054 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 7 1015 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aed2g1944 1054 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1944 Aed-Chr2 24010778 24017112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1944 27 398 C2H2 Transcription Factor Family AT4G04885 37.374 1.77e-56 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1944 K14400 - gmx:100788958 1646.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1944 2 24010778 24017112 Aed2g1944 2 24010778 24017112 ECH