Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1943 ATGGAGAGCACGCGCAGATCGAGAGAACCGGGCCCCAAGAAGCCCCGATTGAACGAGGAACTCAGCGCTCGACAGTTACCTCAACGACAGCAAGGTACTGCGTTGCCGTCTACGAGGTTTCGAGCAAATGACAGAGACTCCGAAATCGGCGTTTTGGGTCGTGGCGGTGGCGGAGACGGCGGGTACCACCCGCAGCCTCCACCGCACCAAGAGCTCGTGACTCAGTATAGGACCGCGCTTGCTGAGCTCACTTTCAATTCGAAGCCGATAATTACCAACTTGACTATTATTGCCGGAGAGAATCAGTCTGCTGCCAAGGCTATTGCTGCCGCTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTTTATCTCTTAGACAGTATCGTTAAGAACATCGGGCGGGATTATATAAAATATTTTGCCATCAAACTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTTGTGTTCACACAAGTATGAGACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGGCAATGGTTCAGCATCAGTATCTGCTACAGTCAGGAGTGATTTACAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGCAAAGGAGTAGTTAATGATGTGACTGGAGCTGTTTCAAACTCAAATGAGGATTTGGAGAGGCCAGATAGAGCTTTGGGTGCATCACGACCGTGGCTGGATCCTAGGCTTAACATGCTTAATAATCAGCAGAAACATAGAGATGCATTTAATGATTCTGTTCCCGAAAAGAGCATTGATGGATCATACGGAGGCAGTGAATATAGTTCTTCCATTTCAAGTAATTTGGTATCAGGGGCTGGAAGAACTGGAAGTAAGCTCATTGATTTAGGTCATGACAAAACATGGTTCAAAACAGATGGTGGTGATGCAGATACCGCATTTGGGCAAAAAAATGGTTTCAGTCTTAAGCGCAGTTTTCCAAATCATGAAGCACCAAAGTCCATGAATTTGGATGCACATCGTCAGCCCAGACAAAGCATAACTAACCCGTGGAGCAATGTAATGTCAGGTAACTGGAAAAATTCTGAAGAAGAGGAGTTCACATGGGATGAGATGAACAATGATTTGACTGACCATGGACCCAATGTATCAAACAATTTGAGCACAGACTCATGGATGGCAGATGATGAAAATTTGGAAGGTGAAGATCACCTACAAATCACACGCCCCTTTGGGGAAAAGGTTGATAGAGAAATATCCACTGTTAAGAAACAACTACCTGGTTTGGAGAGCCATCTACCATCATCCTGGCAATTGCAGACGCACCACTCAATTGATAAGTTGAATCTGAAGCCAGGATACTCAGAAGGATTTGTGTCCACTCTTAATGGCTTACCAGCCAACACAAGTTCTTTGGCTGTCAAGAAGGGGAACCAATCCTTTTTGTCGAATGAAGCAGTTGGAATGACCAAATTTGTGGGACAACAATTTGATTCTGGGGAAACTGAATCCCCTTCTGGGCAGTCACCTCTGCGACAACAGTCTCCATTGTTGCCAGGAACAGTACACCACCCTCACTCAATGCAAAATTTGGCTGCGCAAGAATTGCCTCAGAATCTCAAAACCTCTCAATTTTTGGGAGGTCCAATAAGTCAGCATATTAGAGATCGCTCACCTACTCTTCGTCCCATCGGTCAGGTTGGTAACGTGCGAAGATCACAGGAAAAGGACATGCAGGGCCCATTATCTTCCATGACTTCTTTTCGACCAAAGCTTCAGCAACTGCAGCCGGACCCATCGCAGACAGAAGTTACTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAGGGAAACTTCAGAACAGTTGATCACAAGTAATTTATCAGCTGCACCTATCAAGAGTGGAATCATCCCCAAGAAAACAATTACAAATAATATGGATCCAAGGAAGCGGCCTTCTCAGACTGGGGTTCAGCCTACTCAGTCTGGTAGGGGTACTACATTAATTTCTTCAGGGTCTGCAGTGGCATCACCATCTTCATTAGATCCTCTGCATAATGATACATCTACACTGCCAAAAAAAACTAAAGGAAAGGCCGGACAACCACCACAAAAGCTTTCTACTCAACCGCCTGCTTCCTCTAATGTGAGCAGTTCCTCAGCTCCAACCTTAAATGCTGCCAAAAATAAGAAACTAAATCCAATTGCAAGCCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTACAGAAACAGAATCACCAACTACAATGCCAAGCGAGGTGCTGAAGGGATCCAAAGATGAAACTGAAATCATTACAACCAGTTGTTCTTTACCAGTTACACCAATTTCTGGTTCTGCAGCTGTCCCAGTATCGTCTTGTGGAGACGAGGTTGATGCTGCCACAAAAACCTCTCATGCCTCACCTCAATCAACTAGTAAGGAAATCAAAAATCTCATAGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCATCCACTTGTCATTAGGGAATTATTGGATGATTTCCCTCATTATTGCAAAATTTGCGGTATTAAGATTAAACAAGAAGAACAGTTTAATAGACACTTGGAGTGGCATGACACAAGGGAACATGGTCCAATTAAGGCATCAAGAAGTTGGTATGCTAAGTCGAGTGATTGGATTGCTGGCAAGGCAGAATATTCGTCTGAGTCTGAGTCTGGGTTTAGTGATTCTGTTGATGTACATGACCAAAAATCAGACAGCAGTCAATTGGATACGATGGTTCTTGCAGATGAAAACCAGTGTCTGTGTGTATTGTGTGGTGAGATATTTGAAGATGTGTACTGTCATGAAAGGAACGAATGGATGTTCAAAGGGGCCGTTTACATGAACTCTTCAGATATCAGCAGTGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATCATCACCAATTTGGTAAAGCCTATTATCTGA 3099 0.4395 MESTRRSREPGPKKPRLNEELSARQLPQRQQGTALPSTRFRANDRDSEIGVLGRGGGGDGGYHPQPPPHQELVTQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAAAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAIKLPEVFCKAYRQVDPCVHTSMRHLFGTWKGVFPPQCLQMIEKELGFAPAGNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVNDVTGAVSNSNEDLERPDRALGASRPWLDPRLNMLNNQQKHRDAFNDSVPEKSIDGSYGGSEYSSSISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTAFGQKNGFSLKRSFPNHEAPKSMNLDAHRQPRQSITNPWSNVMSGNWKNSEEEEFTWDEMNNDLTDHGPNVSNNLSTDSWMADDENLEGEDHLQITRPFGEKVDREISTVKKQLPGLESHLPSSWQLQTHHSIDKLNLKPGYSEGFVSTLNGLPANTSSLAVKKGNQSFLSNEAVGMTKFVGQQFDSGETESPSGQSPLRQQSPLLPGTVHHPHSMQNLAAQELPQNLKTSQFLGGPISQHIRDRSPTLRPIGQVGNVRRSQEKDMQGPLSSMTSFRPKLQQLQPDPSQTEVTAKTKLPQSKVSLTRETSEQLITSNLSAAPIKSGIIPKKTITNNMDPRKRPSQTGVQPTQSGRGTTLISSGSAVASPSSLDPLHNDTSTLPKKTKGKAGQPPQKLSTQPPASSNVSSSSAPTLNAAKNKKLNPIASLLSSLVAKGLISTETESPTTMPSEVLKGSKDETEIITTSCSLPVTPISGSAAVPVSSCGDEVDAATKTSHASPQSTSKEIKNLIGFDFRPNVIREFHPLVIRELLDDFPHYCKICGIKIKQEEQFNRHLEWHDTREHGPIKASRSWYAKSSDWIAGKAEYSSESESGFSDSVDVHDQKSDSSQLDTMVLADENQCLCVLCGEIFEDVYCHERNEWMFKGAVYMNSSDISSEMESRNVGPIIHAKCLSENSIITNLVKPII 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1943 1032 MobiDBLite consensus disorder prediction 205 268 - -
Aed2g1943 1032 SMART 558neu5 71 193 IPR006569 -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 284 304 - -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 1 20 - -
Aed2g1943 1032 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 5 1025 - -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 604 652 - -
Aed2g1943 1032 ProSitePatterns Zinc finger C2H2 type domain signature. 884 904 IPR013087 -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 1 70 - -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 575 652 - -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 229 254 - -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 682 760 - -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 205 220 - -
Aed2g1943 1032 Gene3D - 65 193 IPR008942 -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 529 548 - -
Aed2g1943 1032 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 5 1025 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aed2g1943 1032 SUPERFAMILY ENTH/VHS domain 68 196 IPR008942 -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 529 556 - -
Aed2g1943 1032 CDD CID_Pcf11 73 183 - -
Aed2g1943 1032 Pfam CID domain 78 186 IPR006569 -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 673 760 - -
Aed2g1943 1032 ProSiteProfiles CID domain profile. 68 196 IPR006569 -
Aed2g1943 1032 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1943 Aed-Chr2 24003790 24009466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1943 25 408 C2H2 Transcription Factor Family AT4G04885 37.284 2.51e-57 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g1943 CID 2.4e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1943 K14400 - gmx:100788958 1692.94