Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1925 ATGGAATTTAAAGGAAGAGATCATCATCATCATCATCATCTAGACACCAAAGTGGAAACAGTAGATATGGATTGGAATCACAGCACAAAACCATCATTTGTTCCCCGGCCAGAGACCTTAAGCTTCTTCTACAACTACAACAACAACAACAACCCATATCCAGGAGTGGAAGTGAATGAAACGGCAGCATTAATGATGGAGACAGGAGGAGAAGGGTCAGTGGTTCCAGGAATGGAAAGCGGAAACAAAGAGAAGAAGAAGCGCTTAACAAATAAGCAGATAGAGTTATTGGAGATGAGTTTTCAGGAGGAGATAAAGTTGGATCCTGAAAGGAAGATGAAGCTTTCTCGGGAGCTAGGACTGCAGCCTCGCCAAATCGCAGTTTGGTTCCAAAATAGACGTACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACGATATGCTTAAACATCAATACGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAATAAGTAAAGAGCAAATAGGTTATGGGACGCAAACAGCATATGGCGGTTATACAGAAATATCAGGAGAAGAAACAGTAGAAAGCACGTCAGAGGGTCTAATTAGGGGTTCCAACTCCAACAAGAAGCAAGAGGCACGAGGTGGAAAGAATATTAACATTGAGCAGCAGCAGCCCTATTGTTCTTTCACTGTGGACGATTATAACACCACTACTGTTTCAGTACTTCCTCACTGCCACTGGCCTGGCCCTGTTGTGCCTTATTAG 786 0.4338 MEFKGRDHHHHHHLDTKVETVDMDWNHSTKPSFVPRPETLSFFYNYNNNNNPYPGVEVNETAALMMETGGEGSVVPGMESGNKEKKKRLTNKQIELLEMSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDMLKHQYDVISNEKQKLQEEVMKLKAMLISKEQIGYGTQTAYGGYTEISGEETVESTSEGLIRGSNSNKKQEARGGKNINIEQQQPYCSFTVDDYNTTTVSVLPHCHWPGPVVPY 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1925 261 CDD homeodomain 83 141 IPR001356 GO:0003677
Aed2g1925 261 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 23 256 - -
Aed2g1925 261 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 23 256 IPR045224 GO:0003700
Aed2g1925 261 Pfam Homeodomain 83 138 IPR001356 GO:0003677
Aed2g1925 261 SMART HOX_1 82 144 IPR001356 GO:0003677
Aed2g1925 261 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Aed2g1925 261 MobiDBLite consensus disorder prediction 203 224 - -
Aed2g1925 261 Gene3D - 77 147 - -
Aed2g1925 261 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Aed2g1925 261 Pfam Homeobox associated leucine zipper 140 174 IPR003106 GO:0006355|GO:0043565
Aed2g1925 261 Coils Coil 139 180 - -
Aed2g1925 261 SUPERFAMILY Homeodomain-like 66 142 IPR009057 -
Aed2g1925 261 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Aed2g1925 261 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1925 Aed-Chr2 23823435 23824840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1925 32 174 Homeobox Transcription Factor Family AT2G36610 46.386 7.49e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed2g1925 Homeodomain 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1925 - - gmx:100806798 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1925 2 23823435 23824840 Aed2g1925 2 23823435 23824840 ECH
Aed8g0493 8 4187968 4189770 Aed2g1925 2 23823435 23824840 PCT