Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1916 ATGGCGGTTCCTCCGTCGGTCGCCGCCGCTCCGGCCTCGCTCTACGTCGGCGACCTCCACCCCGACGTCTCCGACAACCACCTCGTCGATGCATTCTCCGACTTCAAGAGCCTCGCCTCCGTTCGCGTCTGCAAAGACTCCTCCACAGGCAAATCTCTCTGTTATGGCTACGTCAACTTCGTTTCCCCCCCAAGACGATATGTTGGGAAATTTGTCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCCAGATATACAAATTTGTACATGAAAAACTTGGACCTGGATATTTCAGAAGCAACACTGCAGGAGAAGTTTTCCTATTTTGGGAAAATTGTTAGCTTGGCCATTTCAAAGGACAACAATGGAATGTCCAAGGGTTTTGGCTTTGTGAACTTTGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGAACACAAATAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAGCGGAAGGAACAAATCTTGAAATACAAGGTGATATTTATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACATTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGAAAAGCACAATTGCAGCTCCAGTATGCACAGCAAATAGCAGGACTATCTGGACCTTCAACTGCCATTATCCCTGGCGGATATCCTCCTTACTACTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTTATGTATCAACATCTGGCAATGAGGCAAGGATGGGGGGCTAATGGCTTTGCACCCCCTGCAAGATCATTTCAACAATCACCAGTTCCCACAGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGAAGGTTGAATGGGCATTCAGTATTACAGGGAAATACTTATTTACAACAAGCCCAGCAGATCTCTCCAAGAGAGTCAAGTACTCAGCAGAGAACTGGACAGCCTAAGTACCTACCTAGTGGACGCCAGCGTGACATGGAAAAAGGACCCGGTTCCTCATCTGGTGGTTCAAACACTGGGGGAGGGTCCCCAGGGTCAGAAATGCTGCATAGCATGCTTGCTGGTGCTGCCCCTGAGCAGCAGAAAGAGATACTCGGGGAGCATCTTTACTTGCTTCAGCCTAGCCTAGCAGCAAAAATTACAGGGATGCTTTTGGAAATGGACAATGGAGAATTGCTGCTTCTCCTGGAATCCCCAGAGTCTCTTTCTGCAAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGAACAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTTAACTGA 1467 0.4703 MAVPPSVAAAPASLYVGDLHPDVSDNHLVDAFSDFKSLASVRVCKDSSTGKSLCYGYVNFVSPPRRYVGKFVKKSDRILPGPDARYTNLYMKNLDLDISEATLQEKFSYFGKIVSLAISKDNNGMSKGFGFVNFDNPDDAKKAMEAMNGTQIGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKVIFMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQIAGLSGPSTAIIPGGYPPYYYAATGVISHVPPRAGLMYQHLAMRQGWGANGFAPPARSFQQSPVPTVSNNTRQHRQNRGRLNGHSVLQGNTYLQQAQQISPRESSTQQRTGQPKYLPSGRQRDMEKGPGSSSGGSNTGGGSPGSEMLHSMLAGAAPEQQKEILGEHLYLLQPSLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKNKVSGQDVLHSNFLSAEVAVN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1916 488 MobiDBLite consensus disorder prediction 380 395 - -
Aed2g1916 488 PANTHER POLYADENYLATE-BINDING PROTEIN 5 63 - -
Aed2g1916 488 PANTHER RNA BINDING PROTEIN 191 379 - -
Aed2g1916 488 Gene3D - 72 181 IPR012677 -
Aed2g1916 488 Coils Coil 159 179 - -
Aed2g1916 488 SUPERFAMILY RNA-binding domain, RBD 9 63 IPR035979 GO:0003676
Aed2g1916 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 60 IPR000504 GO:0003723
Aed2g1916 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 237 IPR000504 GO:0003723
Aed2g1916 488 PANTHER RNA BINDING PROTEIN 77 188 - -
Aed2g1916 488 CDD RRM_SF 188 232 - -
Aed2g1916 488 Gene3D - 394 482 - -
Aed2g1916 488 PANTHER POLYADENYLATE-BINDING PROTEIN 336 473 - -
Aed2g1916 488 MobiDBLite consensus disorder prediction 347 399 - -
Aed2g1916 488 PANTHER RNA BINDING PROTEIN 5 63 - -
Aed2g1916 488 MobiDBLite consensus disorder prediction 307 330 - -
Aed2g1916 488 Gene3D - 182 254 IPR012677 -
Aed2g1916 488 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 395 468 IPR002004 GO:0003723
Aed2g1916 488 PANTHER POLYADENYLATE-BINDING PROTEIN 77 188 - -
Aed2g1916 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Aed2g1916 488 PANTHER POLYADENYLATE-BINDING PROTEIN 191 379 - -
Aed2g1916 488 SUPERFAMILY PABC (PABP) domain 345 475 IPR036053 GO:0003723
Aed2g1916 488 Gene3D - 4 65 IPR012677 -
Aed2g1916 488 MobiDBLite consensus disorder prediction 347 367 - -
Aed2g1916 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 156 IPR000504 GO:0003723
Aed2g1916 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 63 IPR000504 GO:0003723
Aed2g1916 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 230 IPR000504 GO:0003723
Aed2g1916 488 SMART rrm1_1 164 233 IPR000504 GO:0003723
Aed2g1916 488 SMART rrm1_1 88 160 IPR000504 GO:0003723
Aed2g1916 488 SMART rrm1_1 13 87 IPR000504 GO:0003723
Aed2g1916 488 SUPERFAMILY RNA-binding domain, RBD 86 240 IPR035979 GO:0003676
Aed2g1916 488 SMART poly_2 407 466 IPR002004 GO:0003723
Aed2g1916 488 MobiDBLite consensus disorder prediction 304 330 - -
Aed2g1916 488 Pfam Poly-adenylate binding protein, unique domain 403 463 IPR002004 GO:0003723
Aed2g1916 488 PANTHER RNA BINDING PROTEIN 336 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1916 Aed-Chr2 23758803 23763442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1916 13 486 Eukaryotic Initiation Factors Gene Family AT2G36660 42.185 3.18e-109 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1916 K13126 - gmx:100779547 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1916 2 23758803 23763442 Aed2g1916 2 23758803 23763442 ECH
Aed2g1916 2 23758803 23763442 Aed8g0484 8 4107154 4111100 PCT