Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1910 ATGGATGAAGACGCGAAAACCAATGTGAGTACCTATGTGACCCCTGTTGTTATCTCCGCCGTTGGCATAACTTGCTCCATTCTAGCAATAGCAGTGTACCATTGCATCCTCTTGAGGTATTTCGTTAGGCCTCTCAGAACGCAACAACGCTGGAACAACGACGTCGTCCACAACACAGACACAAGAATCATCAAGAACGACAACAAAGAGGGGGTACAAGAGGAGATCCTTAACAAAATCCCTGTTTTCTCAATCTCAAGAACAACAACAACAACAACAACGAGTGATGATTTGGTGGACCAAAACGAATGCTCCATTTGTCTTGGACAATGGGAGGATGGGGATTTGGTTCGGTTGTTGCCTTCTTGTAACCATGCTTTCCATAGAACATGCATTGATGCATGGTTCATGAGCCATACCAATTGCCCCGTTTGCCGCTCACCAATCACTTGTCTTGATTGTGATGATCAGTTACCGTTGCCATTAGAAAATAATATTAATGTAGGGGGCAACAACGAACAAATTAGGGTCTTGCATGTGCTGCATGGGAATATGAATATTAGTGTTCCAAGTGACGGGGTGGGTGGTTGTTCCAGCCCAACCCCAAGATTTCAACGACCACTACGACGCCCTAGATTGCTTCACACGCACTCTCTCTCGTCGCACATGCAGAGAAAGCCACGAGGTTTGGTGCTGATGGGTTTGAAAAGATCCCTGTCTTTGGATCAGACATCTTCGTATATTGCCATTGCCATACCAAAGGGGTCATGA 771 0.4578 MDEDAKTNVSTYVTPVVISAVGITCSILAIAVYHCILLRYFVRPLRTQQRWNNDVVHNTDTRIIKNDNKEGVQEEILNKIPVFSISRTTTTTTTSDDLVDQNECSICLGQWEDGDLVRLLPSCNHAFHRTCIDAWFMSHTNCPVCRSPITCLDCDDQLPLPLENNINVGGNNEQIRVLHVLHGNMNISVPSDGVGGCSSPTPRFQRPLRRPRLLHTHSLSSHMQRKPRGLVLMGLKRSLSLDQTSSYIAIAIPKGS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1910 256 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Aed2g1910 256 SMART FANCL_C_2 100 154 - -
Aed2g1910 256 Pfam Ring finger domain 102 146 IPR001841 -
Aed2g1910 256 SMART ring_2 104 145 IPR001841 -
Aed2g1910 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 151 IPR013083 -
Aed2g1910 256 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 252 IPR044675 -
Aed2g1910 256 PANTHER RING-H2 FINGER PROTEIN ATL73-LIKE 10 252 - -
Aed2g1910 256 SUPERFAMILY RING/U-box 88 151 - -
Aed2g1910 256 CDD RING-H2_PA-TM-RING 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1910 Aed-Chr2 23730316 23731086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1910 18 153 C3H Transcription Factor Family AT5G17600 32.857 5.07e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1910 - - aprc:113863869 208.379