Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1907 ATGGACGCCGCCGTGAAGCCAGAGCCGGAACCCGCGACAGTTCCGACGGATCAGCCTCGGAAAGTCTCGGTGGTGAATGGATACATTGTTTACACTCGCGCCAAGAGGCCTCTCAATTCGTGTAACGGTTTTTCAGAGCACGTAGAATTGAAGGCGAGCGCGGAGGAGGTTGAAGTTAAAACGGAGAACGGAGAGTGTGAGAAGCTGAAGGATGAGTCTTCAGTAGTGGTGGTGAGGACGAGCAAGCGGTATCGACGATCGGAGTCGAAAGCGAAGGTTGAGTGTTGTGATCAGACGGTGGTGAGTGAGTCGGAGCAAGTTGCGAATGGTGGAAGTGGAATCAACGGTGCAATGGGAGCTCCGAGGAACAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAGGAGGTTTATGACTGTCAAAGAGCTCTTCGACACTGGTTTTCTCGATGGCGTCTCGGTCGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGAGGTGTGATTAGAGATGGGGGAATATTGTGCTCGTGCTGTCTATGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCCTGCAAACAATATAGGAGAGCTGCGCAGTATATTTGCCTTGAAAATGGAAAAAGCCTGCTTGATATGTTGAGAGTATGCAGGGGAGCTACCCTGCACACTTTGGAGATGACACTTCAAAATTTTGTTTGTTCTCCACCTGAAGAAAGATATTTTACTTGTAAAAGGTGCAAAGGATGTCTCCCTTCTTCATTTGTGGAAAGAGTGGGGCCTATATGCCGTTCTTGTGTGGAATCAAGGAAGTCTGAAGAAAGTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGTTGCTCTCCAACCCATCCAGTACTTCTGAGCTGTCTGTCTCTCCTCAAATTAAGAGACACCAGAAGAAAAGAACAAAGGCATCAAAAAGGATTATCCGTTCAAATACTTCCAAGACTGCTTCTGTGGCTGTTCTGCCTCGGAAGAAAAAAATGTTGAAGATGAAAAAGAAGTCACTGTCAGTAAAGTTGAAGTCCCCCAAAAAAACTTTGAATTCGAATTCGAAATCTAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGATTGCATAAGTTAGTTTTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAAGGTTTCAAAATGAGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATTCATACATTTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCAATCTCTCTCTCAAAAGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGCGGTAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCTCTATCAAGTATTCCGCGTGGTGACTGGTACTGTCAGTTTTGCCAAAACATGTTTCAGAGAGAAAATTTTGTGGTGCACAACGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATCGAACAGATTACCAATAGATGCATTCGCATAGTCAAAGACATTGAATCTGAGCTTAGTAGCTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGCTTTGGTCCACGCACCATAATAATCTGTGACCAGTGTGAAAAGGAATATCATATTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCAGAAGGTAATTGGCTTTGTTGCAATGATTGTACAAGAATACATTCTACTTTGGAAAATCTTTTGGTTAGGGGGGCTGAGAGACTCCCTGAACCTCTCTTGGGTGTGATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATCAATGATATGGACGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGAACAATGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGATGCAACTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATTTTTGGCTCAGATGTTGCTGAACTTCCTTTAGTTGCAACTAGTAATGGGAACCATGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATTGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCAATATGGACAGATAAATTTGGGTTTAGCAAGATGAATCCAGATCAGCTTACCAACTATAGGAAGAACTGCCATCAGATGGTAAGTTTCAAAGGGACAAATATGCTGCATAAAATGGTGCCTTCGTGTCGGGTCATCAATAATGAATCATGA 2547 0.4405 MDAAVKPEPEPATVPTDQPRKVSVVNGYIVYTRAKRPLNSCNGFSEHVELKASAEEVEVKTENGECEKLKDESSVVVVRTSKRYRRSESKAKVECCDQTVVSESEQVANGGSGINGAMGAPRNKLELKMSKKIVVNRRFMTVKELFDTGFLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDMLRVCRGATLHTLEMTLQNFVCSPPEERYFTCKRCKGCLPSSFVERVGPICRSCVESRKSEESSNNVVGKRVRSPRPVLLSNPSSTSELSVSPQIKRHQKKRTKASKRIIRSNTSKTASVAVLPRKKKMLKMKKKSLSVKLKSPKKTLNSNSKSNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMSSGIVCRCCNTEVSPSQFEVHAGWASRKKPYSYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQRENFVVHNANAVAAGRVEGVDPIEQITNRCIRIVKDIESELSSCALCRGVDFSRSGFGPRTIIICDQCEKEYHIGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVRGAERLPEPLLGVIKKKQEEKGLEPINDMDVRWRLLNGKIASPETRTMLLEAVSIFHECFNPIVDATSGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGSDVAELPLVATSNGNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMNPDQLTNYRKNCHQMVSFKGTNMLHKMVPSCRVINNES 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1907 848 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 721 811 IPR016181 -
Aed2g1907 848 ProSitePatterns Zinc finger PHD-type signature. 483 522 IPR019786 -
Aed2g1907 848 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 54 844 - -
Aed2g1907 848 Coils Coil 52 72 - -
Aed2g1907 848 PANTHER AUTOIMMUNE REGULATOR 54 844 - -
Aed2g1907 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 566 629 IPR013083 -
Aed2g1907 848 CDD PHD1_AIRE 482 522 - -
Aed2g1907 848 MobiDBLite consensus disorder prediction 355 379 - -
Aed2g1907 848 MobiDBLite consensus disorder prediction 296 328 - -
Aed2g1907 848 Pfam Tify domain binding domain 420 466 IPR032308 -
Aed2g1907 848 Pfam Tify domain binding domain 170 224 IPR032308 -
Aed2g1907 848 Pfam PHD-finger 483 524 IPR019787 -
Aed2g1907 848 ProSiteProfiles Zinc finger PHD-type profile. 480 525 IPR019787 -
Aed2g1907 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 557 IPR013083 -
Aed2g1907 848 SUPERFAMILY FYVE/PHD zinc finger 469 526 IPR011011 -
Aed2g1907 848 SMART PHD_3 482 523 IPR001965 -
Aed2g1907 848 SMART PHD_3 570 627 IPR001965 -
Aed2g1907 848 SUPERFAMILY FYVE/PHD zinc finger 561 624 IPR011011 -
Aed2g1907 848 MobiDBLite consensus disorder prediction 298 313 - -
Aed2g1907 848 MobiDBLite consensus disorder prediction 362 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1907 Aed-Chr2 23704831 23712300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1907 131 845 PHD Transcription Factor Family AT2G36720 54.645 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed2g1907 TDBD 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1907 - - gmx:100802562 1551.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1907 2 23704831 23712300 Aed8g0475 8 4041303 4051323 PCT
Aed8g1589 8 21048051 21052312 Aed2g1907 2 23704831 23712300 PCT