Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1900 ATGGTTGCATGCAATTGCAGGAGGAGCTTGTGGGTTCGAAGATGTGACGGTTACGGACTTGACACGGCGGCGGTGAGCTCAGTTTTGTTCAACAGCGGAGAGGCATGTGGGGCATGTTACGAGATCAAATGTGTAAACTCTCCTCAGTGGTGTAAGGCAGGGCAACCCTCTATTCTTGTGACGGCAACGAACCTTTGCCCTCCCAATTACGCTCAAGCAAGTGACAATGGAGGATGGTGCAACCCTCCACGCGTGCACTTCGATTTAGCAAAACCTGCGTATCTCAAAATAGCAGAGTACAAGGGTGGCATCGTCCCAGTCCAATATCGCAGGGTACCGTGCAAGAAGCGAGGAGGGATTAAGTTCACAATAACTGGGAATCCATACTTCAATTTAGTAAAAGTGTGGAATGTGGGAGGAGCTGGGGACGTAACAGAAGTGCAGGTGAAGGGTGACAAGAAGTTGATAAATTGGACAAAATTGAAGAGAAATTGGGGTGAGAAATGGGAGACTAATGCAATGTTAGTGGGAGAGACATTGACGTTCAGGGTGAAAACCAGTGATGGAAGCTACTCTACCTCGTACTCTGTTGTCCCGAAGAATTGGCAATTTGGTCAAACCTTTGAAGGCAAAAACTTCTAA 642 0.4751 MVACNCRRSLWVRRCDGYGLDTAAVSSVLFNSGEACGACYEIKCVNSPQWCKAGQPSILVTATNLCPPNYAQASDNGGWCNPPRVHFDLAKPAYLKIAEYKGGIVPVQYRRVPCKKRGGIKFTITGNPYFNLVKVWNVGGAGDVTEVQVKGDKKLINWTKLKRNWGEKWETNAMLVGETLTFRVKTSDGSYSTSYSVVPKNWQFGQTFEGKNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1900 213 Pfam Lytic transglycolase 22 109 IPR009009 -
Aed2g1900 213 Pfam Expansin C-terminal domain 120 199 IPR007117 -
Aed2g1900 213 Gene3D - 119 213 IPR036749 -
Aed2g1900 213 PRINTS Expansin/Lol pI family signature 102 118 IPR007118 GO:0005576
Aed2g1900 213 PRINTS Expansin/Lol pI family signature 26 44 IPR007118 GO:0005576
Aed2g1900 213 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Aed2g1900 213 PRINTS Expansin/Lol pI family signature 158 172 IPR007118 GO:0005576
Aed2g1900 213 SUPERFAMILY Barwin-like endoglucanases 16 137 IPR036908 -
Aed2g1900 213 Gene3D - 2 115 IPR036908 -
Aed2g1900 213 PANTHER EXPANSIN-A15 16 213 IPR002963 GO:0009664
Aed2g1900 213 PANTHER EXPANSIN-A32 16 213 - -
Aed2g1900 213 SMART dpbb_1 22 109 IPR007112 -
Aed2g1900 213 SUPERFAMILY PHL pollen allergen 116 210 IPR036749 -
Aed2g1900 213 PRINTS Expansin signature 94 107 IPR002963 GO:0009664
Aed2g1900 213 PRINTS Expansin signature 118 130 IPR002963 GO:0009664
Aed2g1900 213 PRINTS Expansin signature 44 55 IPR002963 GO:0009664
Aed2g1900 213 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Aed2g1900 213 PRINTS Expansin signature 130 151 IPR002963 GO:0009664
Aed2g1900 213 PRINTS Expansin signature 58 68 IPR002963 GO:0009664
Aed2g1900 213 PRINTS Expansin signature 17 31 IPR002963 GO:0009664
Aed2g1900 213 PRINTS Expansin signature 196 212 IPR002963 GO:0009664
Aed2g1900 213 PRINTS Expansin signature 77 94 IPR002963 GO:0009664
Aed2g1900 213 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 119 IPR007112 -
Aed2g1900 213 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 129 210 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1900 Aed-Chr2 23610744 23611613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1900 16 213 Expansin Gene Family AT2G39700 65.152 9.07e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1900 - - gmx:100800424 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1900 2 23610744 23611613 Aed2g1900 2 23610744 23611613 ECH