Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1895 ATGCATAGGCAAGAGGATGATCACATGCAAATCATGAATTGCAAGGGCAAGCGCACAAAGCGTCAAAGGCTTCCATCCCCACTTAGGTTAACCATGTCAACAACAACATGTTCTAGTTTAGGAAGAATAAGCAGCACCGACAACTCCTCCTCCTCCTCCTCCTCCTTAGGTGCTTTTGATCTCCCAACAACCTCAATGAACCAAGAGGATCAGGACATGGCCAATTGTTTGATTCTCTTAGCTCAAGGTCAAGGTCACAACAACAACAACAACAAGGGATCAGGGTTATATCTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAAATATTCCAAGGCAACTACTGCAGAAGAAAAGCAAGGAGCTAGAGTTGCAACTACTTTTGTGAATCCAGTAGTGGATAATAATACAAATAATCATCCTCATGGTCATTATTGTGACCCTACCCTCACCTTACAATTACCAACGGCTTTGTCTAATAATAGCAGCAGCAGCACTATTAATACTAATGCTAATAAGTCTAAAGTTCATGAGTGTTCCATATGTGGGGCAGAATTTTCATCTGGGCAAGCCTTGGGGGGACACATGAGAAGGCATAGAAATTTTCTGAGTACTAGTTCTGCACCAACGAGGACTGGGGCAATAATTAATGCAAATGGTGGTCATGGGAGCCATCAAATTCCGGAAGCCAGGAAAGATTCTTTGAACTTGGACTTGAATCTTCCGGCACCTGATCATGAGGATCATCATCACAGATCAGAATCCAACTTGTTTCCTTTTCAGGCTAAAGAAAAAGTTATTGTCTTCTCAGCTACTTCTTTAGTGGATTGCCATTACTAA 882 0.4286 MHRQEDDHMQIMNCKGKRTKRQRLPSPLRLTMSTTTCSSLGRISSTDNSSSSSSSLGAFDLPTTSMNQEDQDMANCLILLAQGQGHNNNNNKGSGLYLYECKTCNRCFPSFQALGGHRASHKKYSKATTAEEKQGARVATTFVNPVVDNNTNNHPHGHYCDPTLTLQLPTALSNNSSSSTINTNANKSKVHECSICGAEFSSGQALGGHMRRHRNFLSTSSAPTRTGAIINANGGHGSHQIPEARKDSLNLDLNLPAPDHEDHHHRSESNLFPFQAKEKVIVFSATSLVDCHY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1895 293 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Aed2g1895 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Aed2g1895 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 213 IPR013087 -
Aed2g1895 293 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 89 293 - -
Aed2g1895 293 MobiDBLite consensus disorder prediction 39 59 - -
Aed2g1895 293 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Aed2g1895 293 PANTHER ZINC FINGER PROTEIN ZAT5 10 88 - -
Aed2g1895 293 PANTHER ZINC FINGER PROTEIN ZAT5 89 293 - -
Aed2g1895 293 SUPERFAMILY beta-beta-alpha zinc fingers 98 213 IPR036236 -
Aed2g1895 293 SMART c2h2final6 99 121 IPR013087 -
Aed2g1895 293 SMART c2h2final6 191 213 IPR013087 -
Aed2g1895 293 Pfam C2H2-type zinc finger 99 123 - -
Aed2g1895 293 Pfam C2H2-type zinc finger 190 214 - -
Aed2g1895 293 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 10 88 - -
Aed2g1895 293 Gene3D Classic Zinc Finger 97 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1895 Aed-Chr2 23578433 23579314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1895 4 293 C2H2 Transcription Factor Family AT5G04390 36.074 5.66e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g1895 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1895 - - gmx:100775268 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1895 2 23578433 23579314 Aed1g2622 1 21830526 21831593 ECH
Aed2g1895 2 23578433 23579314 Aed2g1895 2 23578433 23579314 ECH
Aed2g1895 2 23578433 23579314 Aed1g1083 1 10699725 10700672 ECH
Aed2g1895 2 23578433 23579314 Aed8g0459 8 3879839 3880699 PCT