Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1892 ATGGAACCCCATGACCATGAGCATCTAAATAATGAACTTTCTAATAAGAACAAGAAACCCCGCGTTGGTGACTTTCCATCCAAAACCGGATTTGGGAAATTCCGGTGTGGGCACTATAAAAGGAGATGCAAGATCGTAGCGCCCTGTTGCAATGAAATCTTTAGCTGCATTCACTGTCATAATGAGAAAAAGAATTCTTCTTCTGAAGTCAATCCTGCTGACTGGCATGATCTTCCTCCTGATGATGTGAAGAGGGTCATCTGTTCCTTGTGTAATACAGAGCAAGATGTTCAACAGGTGTGCGTTAAATGTGGTGTTATGATGGGTAAATACTTTTGCTCCATATGCAAGATTTTCGACGACGAGCTACACAAAATGCCATTCCATTGTGATGAATGTGGCATCTGCAGAAATGGTGGTAAAGAGAACATGTACCACTGTAAGACATGTGGATGTTGCTATACATTAGCTACGAAGGATACACACAAATGTATGGAAAATGCAATGCGTGTTGATTGCCCAGTTTGCTTCGAGTTTCTGTTTAATTCAATCAAACCCGTTGCTTTAATGGGATGTGGTCACCACATACACATGGATTGTGTGGGGAAAATGTATCAACATCAACGGTTTGCATGCGCATTTTGTTCAAAATCATATTGTGATATGTCTGTACGTTGGAGGGCATTGGATGAAGAGGTAAGTTGTATTGCATCAACGCCATTGCCTTTACGCTATCGATATAAGAAGGCTGATATTCTTTGCAACGACTGCTTGGAAACATCTGAAGTAAGGTTTCATGTTGTGGGGCTCAAGTGCCCTAAGTGCAGCTCCTATAACACCAGAAAGACTAATTAG 855 0.414 MEPHDHEHLNNELSNKNKKPRVGDFPSKTGFGKFRCGHYKRRCKIVAPCCNEIFSCIHCHNEKKNSSSEVNPADWHDLPPDDVKRVICSLCNTEQDVQQVCVKCGVMMGKYFCSICKIFDDELHKMPFHCDECGICRNGGKENMYHCKTCGCCYTLATKDTHKCMENAMRVDCPVCFEFLFNSIKPVALMGCGHHIHMDCVGKMYQHQRFACAFCSKSYCDMSVRWRALDEEVSCIASTPLPLRYRYKKADILCNDCLETSEVRFHVVGLKCPKCSSYNTRKTN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1892 284 SUPERFAMILY Zinc hairpin stack 109 166 IPR037275 -
Aed2g1892 284 SUPERFAMILY RING/U-box 172 225 - -
Aed2g1892 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 236 IPR013083 -
Aed2g1892 284 SUPERFAMILY CHY zinc finger-like 33 107 IPR037274 GO:0008270
Aed2g1892 284 MobiDBLite consensus disorder prediction 1 23 - -
Aed2g1892 284 ProSiteProfiles Zinc finger CTCHY-type profile. 108 172 IPR017921 -
Aed2g1892 284 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 26 283 - -
Aed2g1892 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 26 283 - -
Aed2g1892 284 MobiDBLite consensus disorder prediction 1 24 - -
Aed2g1892 284 Pfam CHY zinc finger 36 118 IPR008913 GO:0008270
Aed2g1892 284 ProSiteProfiles Zinc finger RING-type profile. 173 216 IPR001841 -
Aed2g1892 284 Gene3D - 248 284 - -
Aed2g1892 284 Pfam Zinc-ribbon 220 281 IPR039512 -
Aed2g1892 284 Pfam RING-type zinc-finger 173 212 IPR027370 -
Aed2g1892 284 SMART ring_2 173 215 IPR001841 -
Aed2g1892 284 ProSiteProfiles Zinc finger CHY-type profile. 29 106 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1892 Aed-Chr2 23544102 23546582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1892 26 281 C2H2 Transcription Factor Family AT3G18290 37.548 5.70e-46 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1892 K10144 - gmx:100777215 393.275