Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1890 ATGCTCCAAACAACCTGCATTTTGCTACTCTCAGTACTCAGCTCTTTTTCACCACTTGGAACAGCAATGCTCAACCTTACTCTTCCCGGAGCTCATCCAGACCCCGAAGCTGTTGCCCACCAAGTTCATAGAAAGGTTAATGCTTCAATTGCAAGAAGGGAAATGTTAACAGTGTCAGATGCGTGCCTAACGGGGAACCCTATCGATGATTGTTGGAAATGTGACCCAGATTGGCCAAATAACCGGCAGAGGCTAGCTGATTGCGCCATTGGGTTCGGTCAGTATGCAAAGGGAGGGAAAGGTGGTGAGTTTTACGTTGTCACAGACTCCTCAGATAAGGACCCTGTGAACCCAAAACCCGGGACCCTGAGATACGCGGTCATACAGAACGAGCCTCTGTGGATCGTGTTCCCGAGTAACATGATGATTAAGCTGTCTCAGGAGCTCATTTTTAACAGCAACAAGACCATTGATGGACGCGGCGCTGATGTCCACATTGTTGGAGGAGGCTGCATTACGTTGCAGTATATAAGCAATGTCATCATACACAACATTCATATCCATCATTGTCATCCCTCAGGTCCATCCTGCAGAAAAAAAGCTGTGTGCTTGTTTGTTTTGTTTCAAGATTAG 633 0.4692 MLQTTCILLLSVLSSFSPLGTAMLNLTLPGAHPDPEAVAHQVHRKVNASIARREMLTVSDACLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDKDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSNKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGPSCRKKAVCLFVLFQD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1890 210 PANTHER PECTATE LYASE 1 195 - -
Aed2g1890 210 Gene3D - 65 201 IPR012334 -
Aed2g1890 210 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Aed2g1890 210 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Aed2g1890 210 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Aed2g1890 210 SUPERFAMILY Pectin lyase-like 61 193 IPR011050 -
Aed2g1890 210 PANTHER PECTATE LYASE 18-RELATED 1 195 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1890 Aed-Chr2 23533222 23534072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1890 1 194 Polysaccharide Lyase AT3G53190 72.414 2.65e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1890 K01728 - gmx:100775595 360.147