Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1889 ATGGGTTATTATGTTGCAGGGAACACAAATGTTCGATCAAGCCCAGACCACTACGGTTTCAGGACAGAATCAGACGGGGACGGGATATCGATATTCGGGGCGAAGGACATATGGATAGACCACTGCACGCTGTCGAGGTGCAAGGACGGGCTGATAGACGCGGTGATGGGGTCCACCGGGATAACTATATCCAACAACTTGTTCTCCCACCACAACGAGGTTATGCTGTTGGGACACAGCGACGACTACCTCCCGGACTCCGGCATGCAGGTCACCATCGCCTTCAACCACTTTGGCCAGAACCTCGTCCAGCGCATGCCCCGCTGCCGTAGAGGATACATCCACGTCGTCAACAACGACTTCACAGAGTGGGAGATGTACGCCATTGGTGGCAGCGGTGACCCTACTATTAACAGCCAGGGCAACCGCTATATGGCTCCCCATAACCCCTTCGCTAAGGAGGTCACCAAGCGAGTCGAATCGGAACAGGCTAACTGGAAGGGCTGGAACTGGAGATCCGAGGGTGATGTTCTTCTCAATGGCGCCTTTTTTGTCGCTTCTGGTGAAGGCCTTGAGGTTAAGTACGAGAAGGCCTACAGCGTCGAACCCAAGTCCGCTGATCGCATCACTCTTCTCACCATGTCCGCTGGCGTTCTCGGTAATGCCAGGGATAACAACCTCGGGATGTGGAGCAGAGGACCTGCTGCTGATGATGACGACACTACGGACAGCTCCGGAATAGAATACACCGACGAAATGTCCACCACTACAACAATTCTTCCCCCATCATCTTCTTTTCTTCTTCTCTTCTTTTCCTACACCATGACGGTTATTCTATAA 840 0.5298 MGYYVAGNTNVRSSPDHYGFRTESDGDGISIFGAKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNLFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGQNLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGDPTINSQGNRYMAPHNPFAKEVTKRVESEQANWKGWNWRSEGDVLLNGAFFVASGEGLEVKYEKAYSVEPKSADRITLLTMSAGVLGNARDNNLGMWSRGPAADDDDTTDSSGIEYTDEMSTTTTILPPSSSFLLLFFSYTMTVIL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1889 279 Pfam Pectate lyase 23 137 IPR002022 -
Aed2g1889 279 SMART amb_all 2 150 IPR002022 -
Aed2g1889 279 PANTHER PECTATE LYASE 12-RELATED 4 236 - -
Aed2g1889 279 SUPERFAMILY Pectin lyase-like 17 220 IPR011050 -
Aed2g1889 279 PRINTS Pollen allergen Amb family signature 198 221 IPR018082 -
Aed2g1889 279 PRINTS Pollen allergen Amb family signature 25 46 IPR018082 -
Aed2g1889 279 PRINTS Pollen allergen Amb family signature 105 124 IPR018082 -
Aed2g1889 279 PRINTS Pollen allergen Amb family signature 169 193 IPR018082 -
Aed2g1889 279 PRINTS Pollen allergen Amb family signature 127 146 IPR018082 -
Aed2g1889 279 Gene3D - 3 220 IPR012334 -
Aed2g1889 279 PANTHER PECTATE LYASE 18-RELATED 4 236 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1889 Aed-Chr2 23532292 23533131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1889 4 279 Polysaccharide Lyase AT3G53190 72.982 6.37e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1889 K01728 - gmx:100775595 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1889 2 23532292 23533131 Aed2g1889 2 23532292 23533131 ECH
Aed2g1889 2 23532292 23533131 Aed8g0453 8 3835394 3838891 PCT