Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1879 ATGGCGTCTCCGTACTATGAATTATTCAACGACTACAACGAAATCGAAATGGAAGCAAATCCACATCTCATTGGAAACCTTAACCCCGCCGACTTTGGATTATCCGACGACGACGACGAAACCGACGAAGAAGACGAGGACGAAGAGTATGTTCCCGCTGCGGCGTCTCCTAGGGTTTCGCACGACGACGCTCCTCGTGCCCTTACGTCCAGCAGCGCAGTCGTTGTCCCCGACGAAGAAGAGGGAAACAAGCGCCGCAGAACCGAAGGTGGCGAGGCTTCGTGCTCCTTCGCGAGTGACAGTAGCCAAGGGAACGAGTGGAATCGCGCCGACGTTGACGGTCTCGTTTGCCCTATTTGTATGGACGTTTGGACCAATAACGGCGAACATCACATCTGCTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATAAAAAAATGGCTTCAACAGCGCAAAAATTCCGGGAAGTGTCCTCAATGCAATAGGAGATGTTCGTTGAAGGATGTCAGGAAACTCTATGCCTCTCGAGTAGTTTCCGTCGAGGAAGAATCTCAGAAGAGAATTCGGTCTCTTGAGGCCAAATGTGCTTCCCTTGAAAGTAAGGGCAGTGACTTTCACAAGAAAGAAGCCGGATGGTGGAAGAGAGAAGCTGCATTGAATCTTCAAGTTCAGAAGCTTACAGAGAGAAACACTTATTTGGAGCAGCTGCTACTAGATATGCAGAGCAGGCAATCTTCATCGATAATTGGCAGTGGAAACTCTCAATGGAGATGTGGATCTGACCACAACTATGACCTAAAGTATAAAGGAAAGGGATCCATTTGGAATTTCGAATTGCAGAAATCATTTCATCTGGATGGTGCTCGTGCTTTTGATATGGACATTTCTAATCAAATTGTATTAATTGCACAAAAGCCAAAGGCAGTAGGTGGAATGCACTTGCTAACTAAAATGAGCTTGATGTCTCCATTTGAGATGCAAGACATCTTACTGCCTTCTGCTACAAATGGTATTAAAGACCTCCATATTTCTCCTTCTAATACTAGCCTGGCCCTCTTTTCTTCAATAGGGAAGAAATTATCAGTGCTCAGCTTAGACAGCGGCAACCTTGTTATCAATTATGATCTACAGGATCCTGCATGGTCTTGTTCATGGGATCTCGATAATTCGCATTACATCTATGCTGGACTACAGAATGGTTCTGTCTTGGTGTTTGATATGCGCCAAACTGCAGGACCCATGAAATCTTTAGTTGGTTTGACTAGCAACCCTGTGCATACTGTACAGTCTCTTGCACAAACTTCAAGTCTTTCTTCTGGTGTTAAAAACATCCTATCTGCATCTGCCACTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAGTGGCCGCTTATGGTTCCTGAAACCGATAATCAAGGAGTTTGCATATCCCTTGCCTATTGCCGAAGCAGTGATGACATTGTTGCTTCATACCGACCGAAATTTGACATGTCCATGGATGTGCATCTCTCTCAACCATCACCCACCCCTCTTAGTACTGGACATTCCGTACAGGGCACTCATGTCTTGTTCAATAGAATGGGCAGTCATGATTTCCAAAAGGTAGGTTCCTCATATGCGAATGTAAGTAAAATTCGATTACCAAAATGTGTAATTATAGACGTAGAAGGGAATCAGAGCAGATTGTTTGCATCTTGGGATGAAGTTGCATGTGATTTGGTCTTGCATGAGTTGCCATCTTTTAGAGTTCTCCAGCAATTCAAAATGGCAGCGCAGGCCCGTGATCTTAGGTACTCACCTAGCCATGGAATACTTGGTTGTTTAAGTGAGAACACATTGCAGCTTTTCAATTCCAAACACTCGTAG 1872 0.4487 MASPYYELFNDYNEIEMEANPHLIGNLNPADFGLSDDDDETDEEDEDEEYVPAAASPRVSHDDAPRALTSSSAVVVPDEEEGNKRRRTEGGEASCSFASDSSQGNEWNRADVDGLVCPICMDVWTNNGEHHICCLPCGHIYGMSCIKKWLQQRKNSGKCPQCNRRCSLKDVRKLYASRVVSVEEESQKRIRSLEAKCASLESKGSDFHKKEAGWWKREAALNLQVQKLTERNTYLEQLLLDMQSRQSSSIIGSGNSQWRCGSDHNYDLKYKGKGSIWNFELQKSFHLDGARAFDMDISNQIVLIAQKPKAVGGMHLLTKMSLMSPFEMQDILLPSATNGIKDLHISPSNTSLALFSSIGKKLSVLSLDSGNLVINYDLQDPAWSCSWDLDNSHYIYAGLQNGSVLVFDMRQTAGPMKSLVGLTSNPVHTVQSLAQTSSLSSGVKNILSASATGLCQWNIDSEEWPLMVPETDNQGVCISLAYCRSSDDIVASYRPKFDMSMDVHLSQPSPTPLSTGHSVQGTHVLFNRMGSHDFQKVGSSYANVSKIRLPKCVIIDVEGNQSRLFASWDEVACDLVLHELPSFRVLQQFKMAAQARDLRYSPSHGILGCLSENTLQLFNSKHS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1879 623 CDD mRING-C3HGC3_RFWD3 113 163 - -
Aed2g1879 623 Gene3D - 317 509 IPR015943 GO:0005515
Aed2g1879 623 ProSiteProfiles Zinc finger RING-type profile. 117 163 IPR001841 -
Aed2g1879 623 PANTHER RFWD3 PROTEIN 36 618 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Aed2g1879 623 Pfam Ring finger domain 117 163 IPR001841 -
Aed2g1879 623 Coils Coil 183 203 - -
Aed2g1879 623 SMART ring_2 117 162 IPR001841 -
Aed2g1879 623 MobiDBLite consensus disorder prediction 33 50 - -
Aed2g1879 623 SUPERFAMILY RING/U-box 109 169 - -
Aed2g1879 623 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 36 618 - -
Aed2g1879 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 233 IPR013083 -
Aed2g1879 623 MobiDBLite consensus disorder prediction 24 105 - -
Aed2g1879 623 SUPERFAMILY WD40 repeat-like 280 485 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1879 Aed-Chr2 23481617 23486978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1879 117 168 C3H Transcription Factor Family AT1G51930 39.623 2.38e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1879 K15691 - gmx:100818898 878.241