Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1872 ATGTCAAAAGATTCTGAGGAGGAGGAGGAGGAGATAAAAACCATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTTGTTCCTGAGGAAATGAACAACAACACTTGTTCTACTTCTGAACCCAACAACACTAACAAAGATGTTATTGTTAGTGCTTCTTCTTCTTCTGCAACAGCAGCAGCAGATACCAAGAAAGAGAGTGTTCCCTCTGTTGGGTTCGGAGAGCTATTTAGATTCGCTGATGGATTGGATTACGTTCTGATGGGAATTGGAACAGCTGGAGCATTTGTACACGGTTGTTCTCTCCCTCTCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGTTCATGATGTCGACAAGATGACTCAGGAAGTCGTCAAGTATGCATTATACTTCCTGGTGGTAGGGGCTGCTATATGGGTTTCTTCATGGGCAGAGATTTCTTGTTGGATGTGGAGCGGGGAGAGGCAATCGACAAAGATGAGAATCAAGTATCTGGAGGCTGCGTTGAACCAGGACATTCAGTTCTTCGACACCGAGGTTCGGACGTCCGATGTTGTCTTCGCCATCAACACTGATGCTGTCATGGTCCAAGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCTACGTTTGTTTCTGGTTTCGTTGTGGGTTTCACTGCTGTGTGGCAACTGGCTCTGGTCACTCTTGCTGTTGTCCCTATGATAGCTGTGATTGGAGGCATTCACACCGCCACTTTGTCCAAGCTCTCCGGCAAGAGCCAGGAGGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACGATTGCGCAAATCCGGGTGGTGCTGGCCTTTGTTGGGGACTCCAGAGCATTGCAGGCTTATTCATCAGCCTTGAGGGTTGCACAGAAGATTGGCTACAAAAATGGGTTTGCAAAGGGAATGGGATTGGGTGCTACTTACTTTGTTGTCTTCTGCTGTTATGCGCTTCTGCTGTGGTATGGAGGCTATCTGGTTAGGCACCACGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATTGGTGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGTTGCATTTACTAAAGCAAGAGTTGCTGCTGCGAAGATTTTCCGTATAATTGATCACAAGCCGAGTATTGATCGGAATAGCGAATCTGGCATTGAACTAGACACGGTTACTGGACTTGTGGAGCTGAAAAATGTGGACTTTTCTTATCCATCTAGGCCAGATGTTCAGATCCTCAATGACTTCTCCTTGAATGTGCCTGCTGGCAAGACCATAGCTTTAGTTGGTAGCAGTGGCTCTGGCAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCAGGACAAGTTCTGCTAGATGGGCATGACATTAAAACATTGAAGCTTAGATGGCTGAGGCAGCAGATAGGACTAGTGAGCCAAGAGCCAGCTTTGTTTGCTACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCAAGGGTTGCTAATGCACATTCCTTCATTATTAAACTTCCTGATGCCTATGAAACACAGGTGGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGAGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGACGAAGCAACAAGTGCATTGGACTCGGAGTCGGAAAAGCTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTAATTGCCCATCGCCTCTCCACAATTCGCAAAGCTGACCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATCGGAACTCACGATGAGCTCTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCACGTAGGCTATCTGATTTCTCTACATCTGACTTTAGTCTGTCCCTTGATGCATCACATCCAAATTACAGGCTTGAAAAGCTTGCTTTCAAAGAGCAAGCTAGTTCCTTCTGGAGGCTTGCAAAAATGAACTCTCCCGAATGGCTTTATGCTTTAATTGGCTCTATAGGGTCTGTTGTTTGTGGATCCCTTAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTTAGTGTGTATTACAATCCAGACCACAGATACATGATCCACGAAATAGAAAAGTACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTCTCTTCAACACATTGCAACACTTCTTCTGGGACATTGTTGGGGAAAATCTTACAAAACGTGTGAGGGAGAAAATGCTGACGGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCAGGGTTTGTGTTGCAGTGGCGCCTTGCCCTTGTGCTCGTAGCTGTCTTTCCTGTTGTAGTTGCAGCCACAGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCCAAGGCTACACAACTAGCAGGAGAAGCTATAGCCAATGTAAGGACTGTCGCAGCCTTCAATTCAGAAGCAAAAATTGTTGGCCTTTTCTCCTCCAATCTCCAAGCTCCACTTCAGCGTTGTTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCAAATGGTGCTGCTGAAACTCTAACACTGGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTTTTCGAACTCCTTGACCGCAGAACTGAAATTGAGCCTGATGATCAAGATGCCACTCCTGTTCCTGATCGTCTTCGTGGTGAAGTTGAATTTAAGCATGTAGACTTTTCTTATCCAACTCGCCCGGATATGCCAGTTTTCCGTGACCTCAGTCTTCGTGCAAGGGCTGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTGATACAGCGATTCTATGATCCAACATCTGGTCGGATCATGATTGATGGCAAGGACATCAGGAAATACAACCTCAAGTCCTTAAGAAGGCACATTTCTGTGGTGCCTCAGGAGCCATGCTTGTTTGCCACTACTATTTATGAAAACATTGCTTATGGACATGAGTCAGCCACTGAAGCTGAGATCATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGGTTTGCCAGATGGATATAAAACATTTGTTGGGGAGAGAGGTGTTCAACTGTCCGGGGGACAAAAGCAAAGAATAGCCGTTGCTCGGGCTTTTGTGAGGAAGGCAGAGCTTATGCTTCTTGATGAGGCCACGAGTGCACTTGATGCCGAATCTGAGAGGTCTGTTCAGGAGGCTCTAGACCGCGCCTCCTCAGGAAAAACAACTATCATTGTTGCACACAGGCTATCAACAATCAGGAATGCAAATCTGATTGCTGTGATTGATGATGGGAAAGTAGCTGAGCAAGGCTCACATTCACAGTTGTTGAAAAACCACCCGGATGGGATTTATGCGCGCATGATTCAGTTACAAAGGTTCACACACAGCCAAGTCATTGGAATGGCCTCAGGTTCAAGCTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4008 0.4581 MSKDSEEEEEEIKTIEQWKWSEMQGLELVPEEMNNNTCSTSEPNNTNKDVIVSASSSSATAAADTKKESVPSVGFGELFRFADGLDYVLMGIGTAGAFVHGCSLPLFLRFFADLVNSFGSNVHDVDKMTQEVVKYALYFLVVGAAIWVSSWAEISCWMWSGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTATLSKLSGKSQEALSQAGNIVEQTIAQIRVVLAFVGDSRALQAYSSALRVAQKIGYKNGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMVAFTKARVAAAKIFRIIDHKPSIDRNSESGIELDTVTGLVELKNVDFSYPSRPDVQILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDAYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIHEIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEAKIVGLFSSNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDQDATPVPDRLRGEVEFKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRIMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESATEAEIIEAATLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1872 1335 Gene3D - 1060 1315 IPR027417 -
Aed2g1872 1335 Gene3D ABC transporter type 1, transmembrane domain 137 1042 IPR036640 GO:0005524|GO:0016021
Aed2g1872 1335 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 746 1033 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g1872 1335 MobiDBLite consensus disorder prediction 1316 1335 - -
Aed2g1872 1335 CDD ABC_6TM_Pgp_ABCB1_D1_like 90 387 - -
Aed2g1872 1335 Pfam ABC transporter transmembrane region 747 1016 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g1872 1335 Pfam ABC transporter transmembrane region 91 364 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g1872 1335 CDD ABC_6TM_Pgp_ABCB1_D2_like 735 1051 - -
Aed2g1872 1335 Pfam ABC transporter 1088 1236 IPR003439 GO:0005524
Aed2g1872 1335 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 414 650 IPR003439 GO:0005524
Aed2g1872 1335 Gene3D - 412 677 IPR027417 -
Aed2g1872 1335 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 90 1312 IPR039421 -
Aed2g1872 1335 SMART AAA_5 441 627 IPR003593 -
Aed2g1872 1335 SMART AAA_5 1096 1288 IPR003593 -
Aed2g1872 1335 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 90 1312 - -
Aed2g1872 1335 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1069 1305 IPR003439 GO:0005524
Aed2g1872 1335 SUPERFAMILY ABC transporter transmembrane region 78 398 IPR036640 GO:0005524|GO:0016021
Aed2g1872 1335 ProSitePatterns ABC transporters family signature. 1208 1222 IPR017871 GO:0005524
Aed2g1872 1335 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524
Aed2g1872 1335 Pfam ABC transporter 432 581 IPR003439 GO:0005524
Aed2g1872 1335 CDD ABC_MTABC3_MDL1_MDL2 1069 1308 - -
Aed2g1872 1335 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 92 379 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g1872 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1060 1308 IPR027417 -
Aed2g1872 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 653 IPR027417 -
Aed2g1872 1335 SUPERFAMILY ABC transporter transmembrane region 733 1053 IPR036640 GO:0005524|GO:0016021
Aed2g1872 1335 CDD ABC_MTABC3_MDL1_MDL2 414 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1872 Aed-Chr2 23407929 23414658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1872 64 1330 Calmodulin-binding Proteins AT2G36910 89.511 0.0 2329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1872 K05658 - gmx:100814667 2404.02