Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1865 ATGGCCAATCAACCTGAATCCTCTGACGCCGCCGCTAAGGGAACAAAGAAAGACTTTAGCACTGCGATCTTGGAGCGTAAGAAGGCTCTCAATCGGCTCGTGGTTGACGAGGCCGTCAACGATGACAACTCTGTTGTCGCTCTTCATCCTGACACCATGGAGAAGCTGCAACTCTTCCGTGGTGACACCATCTTGATTAAGGGAAAGAAAAGGAAAGATACAGTCTGTATTGCACTTGCTGATGAGACGTGCGAGGAACCAAAAATAAGAATGAACAAAGTTGTGAGAAACAACCTTAGGGTTAGGCTTGGAGATGTTGTTTCGGTGCATCAGTGTCCTGATGTCAAATATGGAAAGCGAGTACACATCCTTCCTGTGGATGATACTATTGAAGGAGTAACAGGAAACCTCTTTGATGCCTACTTAAAACCTTATTTCCTGGAGGCATATCGACCAGTGAGAAAGGGTGACCTTTTCCTTGTGAGAGGGGGGATGAGAAGCATTGAATTCAAGGTTATTGAAACTGACCCTTCTGAGTACTGTGTTGTTGCCCCAGACACAGAGATCTTCTGTGAAGGAGAGCCTGTTAAAAGGGAAGATGAGAATAGGTTAGACGAGGTTGGATATGATGATGTTGGTGGTGTTAGAAAGCAAATGGCACAAATTCGGGAATTAGTGGAACTGCCACTGAGGCACCCACAGTTATTTAAGTCTATTGGCGTTAAGCCACCAAAAGGAATTCTGCTGTATGGACCCCCTGGTTCTGGTAAGACTTTAATTGCTCGAGCAGTTGCAAATGAAACTGGTGCTTTCTTTTTCTGCATCAATGGACCTGAGATCATGTCAAAGCTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCAGAGAAAAATGCACCATCCATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGAGGGAGAAGACTCATGGTGAAGTGGAGCGGAGAATTGTTTCCCAGCTCTTGACCCTCATGGATGGTCTTAAATCACGTGCTCATGTAATTGTTATGGGAGCCACAAATCGCCCCAACAGCATTGACCCTGCCCTTAGGAGGTTTGGAAGGTTTGACCGGGAGATAGATATTGGTGTTCCCGATGAAATTGGGCGTCTTGAGGTTCTTCGAATTCATACAAAAAACATGAAACTTGCAGAAGATGTTGATTTGGAAAGGATAGCCAAGGACACACATGGCTATGTTGGTGCTGATCTTGCTGCTTTGTGTACTGAAGCTGCACTTCAATGCATCAGAGAGAAAATGGATGTGATTGACTTGGAAGACGAGACAATTGATGCTGAGATATTGAACTCTATGGCAGTGACAAATGAGCATTTCCAGACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTTCCCAATTGCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAAAAGTTTGAGAAGTTTGGAATGTCACCTTCAAAGGGAGTTCTCTTTTATGGTCCACCTGGTTGTGGTAAAACACTTCTGGCAAAAGCTATTGCCAATGAATGTCAAGCAAACTTCATAAGTGTCAAAGGTCCTGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGAGGGGTAGTAGTGTTGGAGATGCTGGTGGTGCCGCTGATAGGGTTTTGAACCAGCTACTTACAGAAATGGATGGAATGTCAGCAAAGAAAACTGTGTTCATCATTGGGGCCACTAATCGACCAGACATTATAGACCCAGCTCTTCTGCGTCCAGGTCGTCTTGATCAGTTGATTTATATCCCCCTTCCAGATGAGGATTCCCGTCATCAGATATTTAAAGCTTGCTTGAGGAAATCCCCAATCTCAAAAGATGTTGATCTTAGAGCTCTTGCAAAGTACACTCAAGGCTTTAGCGGTGCTGATATTACTGAGATTTGCCAGCGTGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAGGACATTGAAAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAAGATGATGTTGAAGATGATATAGCCGAAATCAAAGCAGCTCATTTTGAGGAATCAATGAAGTACGCTCGAAGGAGTGTTAGTGACGCTGACATTCGCAAGTACCAGGCATTTGCCCAAACATTACAGCAGTCAAGAGGCTTTGGAAGTGAGTTCAAGTTTGCAGATTCTAGCTCTGGTGGTGGTTCTGCCCCTGCATCCGGTCCATTTGCCTCTGCTGGTGGAGCTGATGAAGATGATCTTTACAGTTAG 2433 0.4451 MANQPESSDAAAKGTKKDFSTAILERKKALNRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPSEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNCSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRKRDNPEAMEEDDVEDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFKFADSSSGGGSAPASGPFASAGGADEDDLYS 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1865 810 Gene3D - 212 376 IPR027417 -
Aed2g1865 810 CDD AAA 486 653 - -
Aed2g1865 810 Pfam ATPase family associated with various cellular activities (AAA) 520 653 IPR003959 GO:0005524|GO:0016887
Aed2g1865 810 Pfam ATPase family associated with various cellular activities (AAA) 247 376 IPR003959 GO:0005524|GO:0016887
Aed2g1865 810 Gene3D - 470 653 IPR027417 -
Aed2g1865 810 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 9 784 - -
Aed2g1865 810 Pfam Cell division protein 48 (CDC48), N-terminal domain 32 113 IPR003338 -
Aed2g1865 810 Gene3D - 9 114 - -
Aed2g1865 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 767 IPR027417 -
Aed2g1865 810 SMART AAA_5 243 379 IPR003593 -
Aed2g1865 810 SMART AAA_5 516 655 IPR003593 -
Aed2g1865 810 SUPERFAMILY ADC-like 31 112 IPR009010 -
Aed2g1865 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 468 IPR027417 -
Aed2g1865 810 SMART CDC48_2_2 132 198 IPR004201 -
Aed2g1865 810 Pfam Cell division protein 48 (CDC48), domain 2 134 197 IPR004201 -
Aed2g1865 810 ProSitePatterns AAA-protein family signature. 623 641 IPR003960 GO:0005524|GO:0016887
Aed2g1865 810 Gene3D - 378 469 - -
Aed2g1865 810 CDD AAA 213 376 - -
Aed2g1865 810 Pfam AAA+ lid domain 675 715 IPR041569 -
Aed2g1865 810 Pfam AAA+ lid domain 399 441 IPR041569 -
Aed2g1865 810 SMART CDC48_N_2 32 115 IPR003338 -
Aed2g1865 810 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 33 770 IPR005938 GO:0016787
Aed2g1865 810 PANTHER AAA-FAMILY ATPASE 9 784 - -
Aed2g1865 810 SUPERFAMILY Cdc48 domain 2-like 114 206 IPR029067 -
Aed2g1865 810 Gene3D - 115 211 - -
Aed2g1865 810 Gene3D - 657 766 - -
Aed2g1865 810 ProSitePatterns AAA-protein family signature. 347 365 IPR003960 GO:0005524|GO:0016887
Aed2g1865 810 MobiDBLite consensus disorder prediction 780 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1865 Aed-Chr2 23343697 23348726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1865 449 712 Calmodulin-binding Proteins AT3G56690 48.106 1.08e-79 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1865 K13525 - gmx:100814141 1537.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1865 2 23343697 23348726 Aed2g1865 2 23343697 23348726 ECH