Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1854 ATGTTCGTCTATTTTTTGTCTTTGGTCTCAGCAGTTTTGTTTTTGAACGCCGGAATATTTGGAAATGGAACTGAATCAAGCCACACCCTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGGATCAACACTCTTCTTCAGGGATACTCTGGCATTAGATTTGAAATCCTAGAAGCCATCACCAAGCTCCTCAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACTGCTTCTGGAGATCTTGTTCCACTTTCTTACATTGCTGGTTTGCTAACTGGCAGACCCAACTCCAAAGCTGTTGGACCTAATGGAGAAGTACTTAATGCCAAGGAAGCTTTTGAATTGGCTACCATCAATTCTGAGTTCTTTGAATTGCAACCAAAAGAAGGCCTTGCCCTTGTTAATGGAACTGCTGTTGGTTCTGGCTTAGCTTCCATGGTTCTCTTTGAGGCTAATATATTGGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTTACTGACCATTTGACACACAAACTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCACATCTTGGATGGAAGTTCCTACATGAAAGATGCTAAGAAGTTGCATGAGATTGATCCTCTGCAAAAGCCAAAACAAGATAGATATGCTCTTAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGGGAAATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGCAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCCCTTGCATCTATTGGCAAGCTCTTGTTTGCTCAATTCTCCGAGCTTGTCAATGACTTTTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGCAGAAATCCTAGCTTGGACTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACCACCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCATCTAGGAAGACAAATGAAGCTATTGAGATCCTTAAGCTCATGTCTTCCACATTCCTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCTGTCAAGGACACTGTGAGTCTAGTTTCCAAGAGGACTCTTACCACAGGTGTCAACGGAGAACTCCATCCTTCAAGATTCTGTGAAAAGGATCTTCTAAAAGTGGTTGATAGGGAGTATATATTTTCCTACATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAGAAACTTAGGCAAGTGCTTGTAGATCATGCATTGGTAAATGCAGAGAATGAGAAGGAAGTGAACACATCAATCTTTCAAAAGATTGCAACCTTTGAGGAGGAGTTGAAGACCCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGCAAAGCTGCAATTCCAAACAAGATTAAAGAATGCAGATCTTACCCACTCTACAAGTTTGTGAGAGAGGAGTTGGGAACTGGGTTGCTAAGTGGAGAAAAGGTTAAGTCACCAGGTGAAGAGTTCGACAAATTATTCACAGCAATGTGCCAGGGCAAAATCATTGATCCTCTTTTGGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCAATTTGTTAA 1788 0.4284 MFVYFLSLVSAVLFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEVLNAKEAFELATINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKSSVKDTVSLVSKRTLTTGVNGELHPSRFCEKDLLKVVDREYIFSYIDDPCSATYPLMQKLRQVLVDHALVNAENEKEVNTSIFQKIATFEEELKTLLPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLSGEKVKSPGEEFDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1854 595 Gene3D Fumarase/aspartase (Central domain) 142 590 - -
Aed2g1854 595 CDD PAL-HAL 12 405 IPR001106 -
Aed2g1854 595 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 77 93 IPR022313 GO:0016841
Aed2g1854 595 Gene3D - 408 529 IPR023144 -
Aed2g1854 595 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 12 584 IPR005922 GO:0005737|GO:0006559|GO:0016841
Aed2g1854 595 Pfam Aromatic amino acid lyase 17 413 IPR001106 -
Aed2g1854 595 Gene3D - 8 141 IPR024083 -
Aed2g1854 595 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 12 595 - -
Aed2g1854 595 SUPERFAMILY L-aspartase-like 12 595 IPR008948 GO:0003824
Aed2g1854 595 PANTHER HISTIDINE AMMONIA-LYASE 12 595 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1854 Aed-Chr2 23250525 23266960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1854 12 595 Monolignol Biosynthesis Gene Families AT2G37040 84.418 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1854 K10775 - gmx:100811101 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1854 2 23250525 23266960 Aed1g2502 1 20736294 20739815 ECH
Aed2g1854 2 23250525 23266960 Aed2g1854 2 23250525 23266960 ECH