Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1849 ATGCTATTTCAGGAATTTGCAGTGAGAAGAGGTTACTGTATGATGGAGTCAAAGGAGAAATTGAAAGATGAGGAGAAGTGTTTAGATTCTCAGCTATGGCATGCGTGTGCAGGAGGGATGGTTCAAATGCCAGTGGTGAATGCTAAGGTGTTCTACTTTCCTCAGGGTCATGCTGAACATGCATGTGGACCCGTGGACTTCAGGGCTTACCCCAAAATCCCACCTTTCATTCAATGCAGAGTCGGAGCTATCAAATACACGGCTGATCCTGAAACTGATGAGGTTTTTGTGAAGCTGAGACTTGTTCCTTTTAACAGCAACGAGGTTGATTTTGAGGATGATGCTAATGGTGTTGTTGTTGGAGCCATGAATGGATCTGAAAATAAGGATAAACCCCCTTCTTTTGCAAAAACTTTGACACAGTCTGATGCTAACAATGGTGGGGGCTTTTCTGTTCCCAGATATTGTGCTGAGACAATTTTCCCTCGGTTGGACTATTCTGCGGACCCTCCTGTTCAGAACATCCTTGCCAAGGATGTCCACGGCGAGACGTGGAAATTCAGGCACATTTATAGGGGCACGCCACGGCGGCACTTGTTAACCACCGGCTGGAGTAGTTTTGTGAATCACAAGAAGCTTGTGGCAGGGGATTCAATTGTGTTTTTGAGAGCCGAAAACGGCGATCTGTGTGTTGGAATCCGGCGGGCTAAGAGGGGAATTGGAATTGGTGGAGGGCCTGAGACACCTTCAGGGTGGAATTCAGCTGGGGGAATTCGTCCTATGCCTTACGGAGGATTTCCTCCGTTTTTGAGGGAGGAAGATAGCCAGCTCTTGAGAAATGGCTTAAGTCCAAATGCAAAGGGTAAAGTGAGGCCTGAAGCAGTTATTGAGGCTGCAACTCTTGCTGCCAATATGCAACCTTTTGAGGTTGTTTACTATCCTCGGGCAAGTAGTCCTGAGTTTTGTGTGAAGGCCAATTTAGTTAGAGCAGCATTGCAGGTTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACCGAGGACTCCTCGCGGATAAGTTGGTTTATGGGAACCATATCTTCTGTTAACTTTGCTGATCCAAGATGGCCTGATTCTCCTTGGAGACTTCTCCAGGTAACATGGGATGAACCAGAGTTACTTCAAAATGTGAAAAGGGTGAGCCCTTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCATTTCTCAACAGCGCCACCGAAGAAGAAGCTGAGATTCCCTCAACACCCGGACTTTTCCCTCGAAGGCCAGATTTCATTGCCAGCATTTCCCAGCAACTTTCTAGGTCCAAGCAATCCCTTTGGTTGTCTAGCTGAAACTACTCCTGCTGGCATACAGGGAGCCAGGCATGCTAATTATGGCATATCCCTATCAAATTTCCACCTCAATAAACTGCAGTCAGGTCTTTTTCAAGCCGGTTCCCCTCCACTTGATCACACTGCTTCACCAATATTGAGGAACAACAACAACCACAACCACGCAAACAACAACAACAACCACGCAGTAACAATGCAAAAGGTCCTCGGCGGCACGAGTGACAACGTCTCTTGCTTGTTATCCATGTCAACTGCTACTACTCAACCTTCAAAGAAATTGGACAATGTGAAGGCACCCCAATTGGTGCTTTTTGGCCAAACAATTCTCACCGAACAGCAAATCTCTGCTAACACGGACCCTACGCTAAATAGTTCATTTGATGGAAATGCTGATAAAATGATGAACAAGTTCTCAAATGGTTCCTATTCTGCTGTTCAACACAAAGAAACCGTGGCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTTGGTCGGACTATGGATCTCACAATGCTTGGATCTTATGAGGAATTGTATAGAAAGCTGGCAAACATGTTTGGCATAGAAAAATCTGTGGTGCTAAGTCACGTGCTTTACCGCGATACAACTGGGGCAGTCAAGCACATTGGAGATGAAGCATTCAGCGATTTCACCAAAACCGCCAGAAGGTTGACCATTCTAATGGGTTCCAACAGCGATCGTAGAGGAATGTAG 2103 0.4589 MLFQEFAVRRGYCMMESKEKLKDEEKCLDSQLWHACAGGMVQMPVVNAKVFYFPQGHAEHACGPVDFRAYPKIPPFIQCRVGAIKYTADPETDEVFVKLRLVPFNSNEVDFEDDANGVVVGAMNGSENKDKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGIGGGPETPSGWNSAGGIRPMPYGGFPPFLREEDSQLLRNGLSPNAKGKVRPEAVIEAATLAANMQPFEVVYYPRASSPEFCVKANLVRAALQVRWCPGMRFKMPFETEDSSRISWFMGTISSVNFADPRWPDSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPTIHLSHFSTAPPKKKLRFPQHPDFSLEGQISLPAFPSNFLGPSNPFGCLAETTPAGIQGARHANYGISLSNFHLNKLQSGLFQAGSPPLDHTASPILRNNNNHNHANNNNNHAVTMQKVLGGTSDNVSCLLSMSTATTQPSKKLDNVKAPQLVLFGQTILTEQQISANTDPTLNSSFDGNADKMMNKFSNGSYSAVQHKETVASLETGHCKVFMESEDVGRTMDLTMLGSYEELYRKLANMFGIEKSVVLSHVLYRDTTGAVKHIGDEAFSDFTKTARRLTILMGSNSDRRGM 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1849 700 Gene3D - 335 408 - -
Aed2g1849 700 PANTHER AUXIN RESPONSE FACTOR 16 691 - -
Aed2g1849 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed2g1849 700 SUPERFAMILY DNA-binding pseudobarrel domain 130 237 IPR015300 -
Aed2g1849 700 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Aed2g1849 700 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Aed2g1849 700 ProSiteProfiles PB1 domain profile. 614 694 IPR000270 GO:0005515
Aed2g1849 700 Gene3D - 611 698 - -
Aed2g1849 700 MobiDBLite consensus disorder prediction 123 142 - -
Aed2g1849 700 CDD B3_DNA 133 235 IPR003340 GO:0003677
Aed2g1849 700 Gene3D - 133 237 IPR015300 -
Aed2g1849 700 Pfam Auxin response factor 298 380 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed2g1849 700 SMART B3_2 135 237 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1849 Aed-Chr2 23200831 23204436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1849 25 696 B3 DNA Binding Superfamily AT4G30080 57.925 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed2g1849 B3 1.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1849 - - gmx:100791442 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1849 2 23200831 23204436 Aed1g2493 1 20649504 20653122 ECH
Aed2g1849 2 23200831 23204436 Aed2g1849 2 23200831 23204436 ECH
Aed2g1849 2 23200831 23204436 Aed1g1121 1 11017659 11020658 ECH
Aed2g1849 2 23200831 23204436 Aed5g0533 5 3845334 3848632 ECH