Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1845 ATGTTCAATGTCATAGGTTTCTCGTTGTTGACGATGGATTCGGTGGCGTATAGGGGATTGCTCTACACATTCTTCATACTCAATTTTGTTTTGGTCTGCCAACTCATTCTCCTTCAACCTCTCGTTTCTGCTTCCGATGGAAACCCTGAAAATGCTGCTGAGTTGTTAGAGCGGGCATCACAGAGCATAAAAGTGAAACATTATACTGAGGCACTTGATGACCTAAATGCTGCAATAGAAGCAGACCCAACCCTTTCAAAAGCATACCTTTTCAGAGCCTCAATTCTTCGTCAGTCATGCAGATATGAGCAATCTGAGAGGAGCTACAAAAAGTTTCTTGAGTTAAAACCCGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTTTATGATTTGGGCAGCTTCTCAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGATTGCAATAAGGCTAAGCTTCTTAAAGTGAAGGTGTTAATAGCTGATAAAGAGTATGAGAGTGCTATTGCTGAGTCTGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGACGCATTGTTGTTACGTGGTCGCGCATATTACTATTTAGGTGATCATGATGTTGCCACAAGGCATTTTCAGAAAGGTCTCCGTCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTTCTCAAAAAGAGTAAAAGTGCTGAAGATAATGCAAACAAGGGTAAACTACGTGTGTCAGTGGAGGAATTCAAAACTGCACTTGCTGTCGACCCTAACCATCTTGCACACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTGGTGAAGCTCTTAAGATTGATGAGGAGCTTGTGGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAACAGAGGATTGGGAGGGAGCTGTGGAGGATATGAGATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATCCGGGAAGCAGTAATGAGGGCCGAGAAAGCCTTAAAGATAAGCAAACGCAAGGACTACTACAAAATTTTGGGAATTTCAAAAACAGCTTCTGCTGCTGATATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCATCCAGATAAGAATGTCGACAAAAGGGAAGAAGCAGAGGCTCAATTCCGAGAAATCGCTGCTGCATATGAGGTTCTGAGTGATGAAGACAAGCGTGTAAGATATGACAGAGGGGAGGACCTTGAAGAGACAGGAATGGGTGGTGGTGGCGGTGGCGGTTTCAACCCTTTTGGTGGTGGGGGGTTTACATATAGTTATGAGGGTGGCTTTCCTGGTGGTGGATTTGGAGGGGGCTTTCCTGGTGGTGGTGGTGGTGGGTATGAGTTCCATTTTTGA 1476 0.4302 MFNVIGFSLLTMDSVAYRGLLYTFFILNFVLVCQLILLQPLVSASDGNPENAAELLERASQSIKVKHYTEALDDLNAAIEADPTLSKAYLFRASILRQSCRYEQSERSYKKFLELKPGDSAAEKELSQLLQAQSALETAQSLYDLGSFSKSLEYIDKVVLVFSPDCNKAKLLKVKVLIADKEYESAIAESGFLLKEDENNLDALLLRGRAYYYLGDHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNANKGKLRVSVEEFKTALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALDSCGEALKIDEELVEALVQRGEAKLLTEDWEGAVEDMRSAAQKSPQDMNIREAVMRAEKALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAQFREIAAAYEVLSDEDKRVRYDRGEDLEETGMGGGGGGGFNPFGGGGFTYSYEGGFPGGGFGGGFPGGGGGGYEFHF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1845 491 Pfam Tetratricopeptide repeat 66 120 - -
Aed2g1845 491 ProSiteProfiles TPR repeat region circular profile. 201 234 - -
Aed2g1845 491 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Aed2g1845 491 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Aed2g1845 491 SMART dnaj_3 372 431 IPR001623 -
Aed2g1845 491 Gene3D Tetratricopeptide repeat domain 41 370 IPR011990 GO:0005515
Aed2g1845 491 CDD DnaJ 373 428 IPR001623 -
Aed2g1845 491 Pfam DnaJ domain 373 436 IPR001623 -
Aed2g1845 491 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Aed2g1845 491 SUPERFAMILY TPR-like 48 368 IPR011990 GO:0005515
Aed2g1845 491 Coils Coil 409 429 - -
Aed2g1845 491 SUPERFAMILY Chaperone J-domain 367 475 IPR036869 -
Aed2g1845 491 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Aed2g1845 491 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 10 491 IPR044620 -
Aed2g1845 491 SMART tpr_5 132 165 IPR019734 GO:0005515
Aed2g1845 491 SMART tpr_5 201 234 IPR019734 GO:0005515
Aed2g1845 491 SMART tpr_5 285 318 IPR019734 GO:0005515
Aed2g1845 491 SMART tpr_5 319 352 IPR019734 GO:0005515
Aed2g1845 491 SMART tpr_5 86 119 IPR019734 GO:0005515
Aed2g1845 491 SMART tpr_5 52 85 IPR019734 GO:0005515
Aed2g1845 491 Gene3D DnaJ domain 371 478 IPR036869 -
Aed2g1845 491 Pfam Tetratricopeptide repeat 202 234 IPR013105 -
Aed2g1845 491 PRINTS DnaJ domain signature 411 431 IPR001623 -
Aed2g1845 491 PRINTS DnaJ domain signature 431 450 IPR001623 -
Aed2g1845 491 PRINTS DnaJ domain signature 375 393 IPR001623 -
Aed2g1845 491 PRINTS DnaJ domain signature 393 408 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1845 Aed-Chr2 23159511 23164231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1845 369 436 C2H2 Transcription Factor Family AT1G74250 47.222 2.35e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1845 K09523 - gmx:100804685 807.749