Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1841 ATGGCAACTGAAGCACATGTCTTTCCCAAGATTAGTGACCAAGTAACTTGTAGCAGAGCTGATAACCCAATTCAAAAGGATGTAGTGCCATCCGAAATAACTGAGGAGCTTCCTAGTAGACATTCACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCACAAGAACGCTGGATGAAACAAGAGAGGAATTGTTTAGAACAAACCAACCTCCAACTTCATCTCTTAGAAGCCAAATCAATGAATTCCAAGGTCCCTTGTCAACCAAAAATATTAAATTTCACAACACAAGTTCAGATGTTGAAGAGGCTTCCATCCCAGAACTTGAAGGTCCACCCCCAGAGCCACTGCAAGAGCCTATGCTTTCAAGAACATTATCACCTAATGTGAAGAAAATATCATCCTTACCTGTCACCCCAATTGCTCAGTCATATCTGGAGTCTGAACACGGAGGGAACATTGCATATCCAGCAATACATGTTGTGAAAAAAGGACAGCAGTTACTGATGCATCGTTCCCATTCAGTTCCAGTGCTTACCAAATATGGAAACACATACGTAGGTGAGATGTTTCGTATTGTTCCTACCACACCACGGTTGGCAAGGATTATTGCCACAACATCTACGAAATCTCCACCTAAGGATACCGTTGAAAATGAGGAGGGGGAAGATATTCCAGAAGAAGAAGCCGTGTGCAGAATTTGTTTTATTGAATTGAGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTAGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGAAACAGAACATGTGATGTGTGCAAGCAGGAAGTTAAGAACCTACCTGTCACACTTTTAAGACTTCTAAATGGCCATACACTACACTTGACAAGGAGCAGAAGTCAACAACAATACAGGCAAGGGGTTTACCTATATGCTCCCATTCTTGTGATTATCAACATGCTAGCATACTTTTGTTTTCTTCAGCAGCTACTTTTTTCAAGTATGGGATCTGGTGCCGTTGCCATTTCTCTTCCTTTGTCATGTATAATAGGCCTACTTGCCAGCATGACATCTACATTCATTGTGCCATGTGAACATGTTTGGCTTTATGCAATTGCCCAGTTTGTTATGGTGGTGCTCGCTGGACATCTTTTCTATTCACTGCTGAATGAGCAGCAAGCTGTTCTATCTATCCTACTTGCTACATTTACTGGGTTTGGAGCTGTGATGTGTGGAGCTTTCATTGTTGTCGATTTTTTGAAGTGGAGACGATGGATTGGTCAATTGAATCAGCAGCATGAGGTGGAACTGCCTCGTTAA 1338 0.42 MATEAHVFPKISDQVTCSRADNPIQKDVVPSEITEELPSRHSHGRRKNLILEIPTRTLDETREELFRTNQPPTSSLRSQINEFQGPLSTKNIKFHNTSSDVEEASIPELEGPPPEPLQEPMLSRTLSPNVKKISSLPVTPIAQSYLESEHGGNIAYPAIHVVKKGQQLLMHRSHSVPVLTKYGNTYVGEMFRIVPTTPRLARIIATTSTKSPPKDTVENEEGEDIPEEEAVCRICFIELREGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVKNLPVTLLRLLNGHTLHLTRSRSQQQYRQGVYLYAPILVIINMLAYFCFLQQLLFSSMGSGAVAISLPLSCIIGLLASMTSTFIVPCEHVWLYAIAQFVMVVLAGHLFYSLLNEQQAVLSILLATFTGFGAVMCGAFIVVDFLKWRRWIGQLNQQHEVELPR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1841 445 CDD RING_CH-C4HC3_MARCH 232 280 - -
Aed2g1841 445 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 90 440 - -
Aed2g1841 445 SMART ringv_2 231 280 IPR011016 GO:0008270
Aed2g1841 445 Pfam RING-variant domain 232 279 IPR011016 GO:0008270
Aed2g1841 445 ProSiteProfiles Zinc finger RING-CH-type profile. 224 286 IPR011016 GO:0008270
Aed2g1841 445 MobiDBLite consensus disorder prediction 98 117 - -
Aed2g1841 445 PANTHER OS02G0165000 PROTEIN 21 83 - -
Aed2g1841 445 SUPERFAMILY RING/U-box 228 283 - -
Aed2g1841 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 287 IPR013083 -
Aed2g1841 445 PANTHER OS02G0165000 PROTEIN 90 440 - -
Aed2g1841 445 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 21 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1841 Aed-Chr2 23144079 23147580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1841 217 286 C3H Transcription Factor Family AT2G37950 36.620 1.82e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1841 - - gmx:100783117 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1841 2 23144079 23147580 Aed2g1841 2 23144079 23147580 ECH