Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1839 ATGGGAAACATCTCAAGCAGCGGCGGCGGTGGCGGCGTCGGAAATCCCCGTCGCCGACAAAACGGAGGCTTCAGGCGGAGTCACCCGCCTCCTCCTCCGCCGGTGACGCCGCAGCCTGAGATCGGCGCGAATCAATTCATGTACCATGGTGGTGCTGCACCGTACCCGAACCCTCCCCTGCATTACCCACAGTACCATTACCCCGGTTACTACCCTCCGGTGCCTTCTCCTATGCCTCATCATCATCATCATCATCATCACCATCAACATCACCATCAACATCCACACATGGACCCGGCGTGGATTCCGGGGCGTTACCCATGTGGACCCATGATGCCTAACCCTGCACCTTTCGTTGAGCATCAGAAAGCCGTTACAATAAAAAACGATGTCAATATCAGGAAAGAGACCCTTAGGCTCGAACCCGATGAAGAAAATCCTGGTCACTTCCTCGTCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTCACACCAATGAAGGAAAACCATCTTGCACTGGTGACTGTGCATTTCGAGCAAGGTCTTGGCCAGAAGTTTAGACAGGCAGCTGGAACTGGTATTGATTTTTCAGTGTTTGAGGAGTCCGAATTATTGAAAGTGGGTGACATGGTTATCTACCCTCTAGCAGTGAAGGCAGATGCATCCCCTGTTAATCATGATGAGTCAGATAGATCTCCAACATCTGGTAGCACAAACTCTCAGATTACCCAAGCGGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAACGGAGAATGACTTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATTTGCTTGTCAGAGCCTCGAGATACAATTGTCCATCCCTGCCGGCATATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAAATAAAGGTAGGGTCTGAGGTGTGA 1095 0.4932 MGNISSSGGGGGVGNPRRRQNGGFRRSHPPPPPPVTPQPEIGANQFMYHGGAAPYPNPPLHYPQYHYPGYYPPVPSPMPHHHHHHHHHQHHHQHPHMDPAWIPGRYPCGPMMPNPAPFVEHQKAVTIKNDVNIRKETLRLEPDEENPGHFLVSFSFDATVSGSITIYFFAKEGEGCILTPMKENHLALVTVHFEQGLGQKFRQAAGTGIDFSVFEESELLKVGDMVIYPLAVKADASPVNHDESDRSPTSGSTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSTENDLDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1839 364 MobiDBLite consensus disorder prediction 78 94 - -
Aed2g1839 364 PANTHER MAHOGUNIN 1 363 IPR045194 GO:0061630
Aed2g1839 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 359 IPR013083 -
Aed2g1839 364 SMART ring_2 310 348 IPR001841 -
Aed2g1839 364 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 309 349 IPR045195 -
Aed2g1839 364 ProSiteProfiles Zinc finger RING-type profile. 310 349 IPR001841 -
Aed2g1839 364 MobiDBLite consensus disorder prediction 1 48 - -
Aed2g1839 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 363 - -
Aed2g1839 364 SUPERFAMILY RING/U-box 309 354 - -
Aed2g1839 364 Pfam Zinc finger, C3HC4 type (RING finger) 308 354 - -
Aed2g1839 364 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1839 Aed-Chr2 23121970 23126086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1839 100 329 C3H Transcription Factor Family AT3G09770 64.435 1.91e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1839 - - gmx:100807343 565.074