Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1836 ATGCAAATGATACCTGGAGATCCCTTTTCACTATCCACTTCCCTCCCAGTTCTTCCCAATGAACAAAACACTATCACAAACCCTAACCCTAATCTCCCTCCACCCTCCAAAAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCGGAGGTTATTGCTCTTTCGCCAAAGACACTCATGGCCACGAATCGTTTCGTCTGTGAAATATGCAACAAAGGGTTTCAGAGGGACCAGAACCTTCAGCTTCACAGAAGGGGACACAACCTTCCTTGGAAGCTACGACAGAGATCAAACAAAGAGGTTGTTCGGAAGAAGGTGTATATCTGTCCGGAGAAAACCTGTGTCCACCACGACGCGGCAAGGGCTCTCGGAGACCTCACCGGAATAAAAAAGCATTTCAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTTCCAAAAAATACGCAGTCCAATCTGATTGGAAAGCTCACTCCAAAACCTGTGGCACCAGAGAATATAAGTGTGACTGTGGCACCCTCTTCTCCAGGAAGGACAGTTTTATTACTCACAGGGCCTTCTGCGATGCCTTAGCTGAAGAGAGTTCGAGACTCACCTCAATTGCTTCAACGAGCCTAAATTTTAAGAGCGAAGATGCAACTATGATGAACACACTGCAGGCTGGTTTTTCGTCACGTGGATTAATGCAAAGTTTTCCACAATTTGGTCCACATGGGTTTCGTTTACAACGACCAAACCTGTCACTTTGGTTGAACCAAGGAAATCACCACATTAACAATCCACTTGATGTGGCATCATCAAGTTCTTCTGGTTTGCCTGAGGTTGTGCACATGGCACAGCAAGCTAGTAACAATGCCTTAATTGGTTCTTCTTCAATGTTCTCCAATTTTGGAATGCCTACTCCTTCCAATTCATCTAATCCAAACCTTCCCCTAATGGGGAAAAAGGTAGAAGCTGGAACTTCAGATTTGGCATCAATTTATTCCGAGAGTCAAAACAAGAATAACTCAAACTCAACTTCTCCAATGTCAGCCACTGCTCTTTTGCAGAAAGCAGCACAAATGGGTTCCACCAGAAGCAGCACCAACCCTTCAATTTTCAGTGGAAGTTTTGGAGTAATGAGCTCATCTTCCACCCAAAGCACTAGTCTAAATAGCAATGCAAACCAAAGCTGTGACCAACTTAACCAAGCCTTTCATCAGAACATGAACCAACAACATGATCAGAAATTTAATGCAACAAGCAGTAGTGGTGCAACTATGTTGGGAATTAGCTCTACTAACACCTTCTTCAGCTCATTGACGCATTCATCAAACGGTTTTGACCAGTTTCTGATGCAAAACAATCTGGAACATAACTTGACAAGAGATTTTCTTGGCATGAGTGGAAATGGAGGTGGACATCACCCATTTCTACCACAAGAGCTGGCAAAATTTGCTTCTTTAGGCTTATCAATGGGTTTGAATCAGTTCACTGCAGGCCATCAATGA 1500 0.4373 MQMIPGDPFSLSTSLPVLPNEQNTITNPNPNLPPPSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLTSIASTSLNFKSEDATMMNTLQAGFSSRGLMQSFPQFGPHGFRLQRPNLSLWLNQGNHHINNPLDVASSSSSGLPEVVHMAQQASNNALIGSSSMFSNFGMPTPSNSSNPNLPLMGKKVEAGTSDLASIYSESQNKNNSNSTSPMSATALLQKAAQMGSTRSSTNPSIFSGSFGVMSSSSTQSTSLNSNANQSCDQLNQAFHQNMNQQHDQKFNATSSSGATMLGISSTNTFFSSLTHSSNGFDQFLMQNNLEHNLTRDFLGMSGNGGGHHPFLPQELAKFASLGLSMGLNQFTAGHQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1836 499 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Aed2g1836 499 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Aed2g1836 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 486 - -
Aed2g1836 499 SMART c2h2final6 108 138 IPR013087 -
Aed2g1836 499 SMART c2h2final6 66 88 IPR013087 -
Aed2g1836 499 SMART c2h2final6 143 163 IPR013087 -
Aed2g1836 499 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Aed2g1836 499 MobiDBLite consensus disorder prediction 1 27 - -
Aed2g1836 499 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 3 486 - -
Aed2g1836 499 MobiDBLite consensus disorder prediction 1 49 - -
Aed2g1836 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Aed2g1836 499 Gene3D Classic Zinc Finger 100 191 - -
Aed2g1836 499 Gene3D Classic Zinc Finger 62 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1836 Aed-Chr2 23103935 23107136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1836 1 486 IDZ Gene Family AT5G03150 48.411 9.95e-142 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed2g1836 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1836 K25870 - gmx:100812495 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1836 2 23103935 23107136 Aed2g1836 2 23103935 23107136 ECH
Aed2g1836 2 23103935 23107136 Aed8g0393 8 3238423 3241585 PCT