Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1833 ATGGGGCATAGGCACTTATATAACACATCTCCATTGTTTGAGGGTGAGGCTGACCAGAATTGGAATCATATGCATACTGATCAACAATATGTGCACCTTGGTAGGACTATCACTTCAGAGAATGGTTCTTTTATTTATCCTGCAGAAAATATGTCCATAGATAACATTTCTTTCCCCTCTCATTGGAATTCATCCACAAGGTCAAATGGATATGCATCCTCAAGTCACAACATTGATGTACCTCCTCATCAGTCAGATGCATCAGGCACTTCTAATGAACAATTTGTGCATTCGTCTAGTGCAGCTGGACCATTCTTTACAGTGTCGGAAAATTATTTACACCAGCCTTCTTCCTCCAATTATGACAGACAAACATTTCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACAAGGGCATCACAAGCGCAAGAGCCCTGGAATTCCTTCAGCCTATGAGAGAGGCAGTACTAGTAGATACTTTAATGCTGCTGGGAGTTCAACTGATCTTCCTACATCTTCAGAATTATGGCAGGAAAAGCCAAATATTGATTCTCAATATATGCCCTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGCAATGTGAGGAGCCGTTCTACACTTGATTTGGATTCCAACCCGGCTAGGACCCATTTATCAAGTAGTCATCCACACAATTCCTACCCTACTGTCCCACCAGTTGACCATTCTAGCATGGTGGATCTTTCTGGTCAAACTTCTGCTACACTGACTAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTGTTATCATCAGATCCAAACGCTTTTGGTCTTGAGACAAGTCCCTTCCTTGTTGGAAGTGGTGCTACTGCTAGCAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAGTTTGGTGCAAGCAGAAATCCTGCAGCTCCTCAAAGTTTTCATAATAATCAAACTCAGACTGCTAGGGGAATTCGAAGCAACTATACTCAGAGATCCACTCCAACATTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACATCTGATGATGGATTGCCTATGGTAGCTGAAAGTTACCCTTCTAGACATCCAAGGCCATTGAGCACCATTGGCTGGAGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTAACTCTGAGGGTTTCCTGGTTGTTGAGCGTGCATCAATGTATGGTTCTAGGAATATGCTTGATCAGCACCGAGAGATGAGGTTGGACATAGATAACATGAGTTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCTATGTGAACACGGGAATCTCTGAGGATTCGCTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCCGAGCAAAGTCAAGACGAAGGAAACTGCGTAATATGTCTGGAAGAATACAAGAACATGGACGATGTTGGAACACTTAAAAGTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGTCCTATCTGCAAAGTATCTGCTTTGCCTGAGGAAACGAAGAATAAATAA 1656 0.4245 MGHRHLYNTSPLFEGEADQNWNHMHTDQQYVHLGRTITSENGSFIYPAENMSIDNISFPSHWNSSTRSNGYASSSHNIDVPPHQSDASGTSNEQFVHSSSAAGPFFTVSENYLHQPSSSNYDRQTFHVDGGFIDLTMGSGQGHHKRKSPGIPSAYERGSTSRYFNAAGSSTDLPTSSELWQEKPNIDSQYMPWDHFTMTPTFRGTGLSIKGEGSLRNVRSRSTLDLDSNPARTHLSSSHPHNSYPTVPPVDHSSMVDLSGQTSATLTRDWSQMNISPANGRVLSSDPNAFGLETSPFLVGSGATASNASVDVGGFHHEFGASRNPAAPQSFHNNQTQTARGIRSNYTQRSTPTFRASSSLRLGHVTSDDGLPMVAESYPSRHPRPLSTIGWRNGDRNGRSRISSERYRSLTEESGLHDRFNSEGFLVVERASMYGSRNMLDQHREMRLDIDNMSYEELLALGERIGYVNTGISEDSLSKCLTETIYCSSEQSQDEGNCVICLEEYKNMDDVGTLKSCGHDYHVSCIKKWLSMKKLCPICKVSALPEETKNK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1833 551 MobiDBLite consensus disorder prediction 137 157 - -
Aed2g1833 551 MobiDBLite consensus disorder prediction 64 96 - -
Aed2g1833 551 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Aed2g1833 551 CDD RING-H2_TTC3 497 540 - -
Aed2g1833 551 Pfam Ring finger domain 497 540 IPR001841 -
Aed2g1833 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 544 IPR013083 -
Aed2g1833 551 SUPERFAMILY RING/U-box 488 543 - -
Aed2g1833 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 547 IPR045191 GO:0061630
Aed2g1833 551 MobiDBLite consensus disorder prediction 376 400 - -
Aed2g1833 551 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 547 - -
Aed2g1833 551 SMART ring_2 498 539 IPR001841 -
Aed2g1833 551 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1833 Aed-Chr2 23080481 23088700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1833 1 550 C3H Transcription Factor Family AT2G37150 43.268 5.44e-121 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1833 - - gmx:100803627 1042.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1833 2 23080481 23088700 Aed2g1833 2 23080481 23088700 ECH
Aed2g1833 2 23080481 23088700 Aed8g0391 8 3207121 3214824 PCT