Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1826 ATGGCTAACGACTCGTCGTTTCTGTTCTCCGGCATTCGTTTCGATAGAAAGAAGTTCGGCGCCGATATTGCCAGGTTCCAGAAAAAAGACAGTGATGCCGATTCGGCGAAGATTTCGAGCGCCGCCGGAGACGAAAGCGATAAAACGAGAGAACCAGTGGAAGAAGAGAAAGTCGCGTCAACGACGAAGAAGAGGAAGCGCAAGGGAACCTCCTCTTCCGAAGCAGTTGAAGGATTCAGCGTGTTCAGAAGTTCAACGTCTGCAGCGCTGTTGAATGATGAAGTTCGAGCTGATAAGGAGTCCGTTGAGCTGAACAAGAAGAAGAAAAAGGAACAAAATAAGCAACTCGAGCGGGACGCAATATTCAGAAAGCAGCACAACATTCATATCTCTGGTTATAATGTGCCGTCTCCGCTTCAAAGCTTTGATGAGTTGAAATCAAGATATAATTGTCCTTCGTATTTGTTGTGCAATCTGAAGGAGCTTGGATTCAAAGAACCTACACCTATCCAAAGGCAAGCTATTCCACTACTTCTACAGGGTCGTGAATGCTTTGCTTGTGCACCGACTGGCTCTGGGAAAACCCTTGCATTTGTGTGTCCAATGCTGATGAAGCTTAAGGAACCAGAAAAAGGTGGCATTCGAGCTGTTATCCTTTGTCATACTCGTGAATTATCTGCTCAAACATATCGAGAGTGCAAAAAGCTTGCTAAGAGAAAAAAATTTCGTATCAAGTTGATGACTAAAAATCTTTTAGAAAATGCTGATTTTTCAAAATTTCCATGTGATATACTAATAGCCACACCACTTCGATTACGCAAGGCTATCAAGAGGAAGAAGAGGAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTGGATGAATCGGATAAGCTATTTGAGCCTGAATTATTCAAGCCAATTGATTCTATTATCAAGGCATGCTCAAATCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGGGAACTTATGCATGATGCTGTTCGTTTGATGTCCAATGCTTTTATGTTCATCAGGAATATGGCTTCAGATACAATAAAGCAAAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCCGAGAGTCTAAATCCTCCAGTGTTGATTTTTCTCCAAAGCAAGGAGCGAGCAAAGGAGCTGTACAGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGCCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGTGTAAACTGTGTGATCAATTATGATTTCCCTGATTCCGCTTCTGCGTATGTCCACAGAATTGGACGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCGATTACTTTTTACACAGAAGACGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCAGGCTGTGAGGTTCCATCTTGGCTCATGGAGTTGCGCAAAAAGAAGTGGAAGAGGCACCGTCCCAAAAGAGAATCAATCTCAGCGAAACCAGACCTATGA 1632 0.4314 MANDSSFLFSGIRFDRKKFGADIARFQKKDSDADSAKISSAAGDESDKTREPVEEEKVASTTKKRKRKGTSSSEAVEGFSVFRSSTSAALLNDEVRADKESVELNKKKKKEQNKQLERDAIFRKQHNIHISGYNVPSPLQSFDELKSRYNCPSYLLCNLKELGFKEPTPIQRQAIPLLLQGRECFACAPTGSGKTLAFVCPMLMKLKEPEKGGIRAVILCHTRELSAQTYRECKKLAKRKKFRIKLMTKNLLENADFSKFPCDILIATPLRLRKAIKRKKRKIDLSRVEYLVLDESDKLFEPELFKPIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRLMSNAFMFIRNMASDTIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLIFLQSKERAKELYSELAFDNIRVDVIHSDLPQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRSGEAITFYTEDDIPFLRNVANLMAASGCEVPSWLMELRKKKWKRHRPKRESISAKPDL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1826 543 Gene3D - 119 350 IPR027417 -
Aed2g1826 543 SMART helicmild6 403 484 IPR001650 -
Aed2g1826 543 Gene3D - 351 528 IPR027417 -
Aed2g1826 543 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 540 - -
Aed2g1826 543 Coils Coil 92 119 - -
Aed2g1826 543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 523 IPR001650 -
Aed2g1826 543 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Aed2g1826 543 CDD SF2_C_DEAD 363 493 - -
Aed2g1826 543 Pfam Helicase conserved C-terminal domain 381 484 IPR001650 -
Aed2g1826 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 496 IPR027417 -
Aed2g1826 543 SMART ultradead3 163 366 IPR014001 -
Aed2g1826 543 MobiDBLite consensus disorder prediction 28 72 - -
Aed2g1826 543 Pfam DEAD/DEAH box helicase 168 334 IPR011545 GO:0003676|GO:0005524
Aed2g1826 543 CDD DEADc_DDX52 155 348 IPR044764 GO:0003724|GO:0005524|GO:0030490
Aed2g1826 543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 347 IPR014001 -
Aed2g1826 543 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1826 Aed-Chr2 23049414 23054025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1826 138 522 Eukaryotic Initiation Factors Gene Family AT3G19760 30.233 4.69e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1826 K14779 - gmx:100800969 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1826 2 23049414 23054025 Aed2g1826 2 23049414 23054025 ECH