Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed2g1826 | ATGGCTAACGACTCGTCGTTTCTGTTCTCCGGCATTCGTTTCGATAGAAAGAAGTTCGGCGCCGATATTGCCAGGTTCCAGAAAAAAGACAGTGATGCCGATTCGGCGAAGATTTCGAGCGCCGCCGGAGACGAAAGCGATAAAACGAGAGAACCAGTGGAAGAAGAGAAAGTCGCGTCAACGACGAAGAAGAGGAAGCGCAAGGGAACCTCCTCTTCCGAAGCAGTTGAAGGATTCAGCGTGTTCAGAAGTTCAACGTCTGCAGCGCTGTTGAATGATGAAGTTCGAGCTGATAAGGAGTCCGTTGAGCTGAACAAGAAGAAGAAAAAGGAACAAAATAAGCAACTCGAGCGGGACGCAATATTCAGAAAGCAGCACAACATTCATATCTCTGGTTATAATGTGCCGTCTCCGCTTCAAAGCTTTGATGAGTTGAAATCAAGATATAATTGTCCTTCGTATTTGTTGTGCAATCTGAAGGAGCTTGGATTCAAAGAACCTACACCTATCCAAAGGCAAGCTATTCCACTACTTCTACAGGGTCGTGAATGCTTTGCTTGTGCACCGACTGGCTCTGGGAAAACCCTTGCATTTGTGTGTCCAATGCTGATGAAGCTTAAGGAACCAGAAAAAGGTGGCATTCGAGCTGTTATCCTTTGTCATACTCGTGAATTATCTGCTCAAACATATCGAGAGTGCAAAAAGCTTGCTAAGAGAAAAAAATTTCGTATCAAGTTGATGACTAAAAATCTTTTAGAAAATGCTGATTTTTCAAAATTTCCATGTGATATACTAATAGCCACACCACTTCGATTACGCAAGGCTATCAAGAGGAAGAAGAGGAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTGGATGAATCGGATAAGCTATTTGAGCCTGAATTATTCAAGCCAATTGATTCTATTATCAAGGCATGCTCAAATCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGGGAACTTATGCATGATGCTGTTCGTTTGATGTCCAATGCTTTTATGTTCATCAGGAATATGGCTTCAGATACAATAAAGCAAAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCCGAGAGTCTAAATCCTCCAGTGTTGATTTTTCTCCAAAGCAAGGAGCGAGCAAAGGAGCTGTACAGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGCCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGTGTAAACTGTGTGATCAATTATGATTTCCCTGATTCCGCTTCTGCGTATGTCCACAGAATTGGACGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCGATTACTTTTTACACAGAAGACGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCAGGCTGTGAGGTTCCATCTTGGCTCATGGAGTTGCGCAAAAAGAAGTGGAAGAGGCACCGTCCCAAAAGAGAATCAATCTCAGCGAAACCAGACCTATGA | 1632 | 0.4314 | MANDSSFLFSGIRFDRKKFGADIARFQKKDSDADSAKISSAAGDESDKTREPVEEEKVASTTKKRKRKGTSSSEAVEGFSVFRSSTSAALLNDEVRADKESVELNKKKKKEQNKQLERDAIFRKQHNIHISGYNVPSPLQSFDELKSRYNCPSYLLCNLKELGFKEPTPIQRQAIPLLLQGRECFACAPTGSGKTLAFVCPMLMKLKEPEKGGIRAVILCHTRELSAQTYRECKKLAKRKKFRIKLMTKNLLENADFSKFPCDILIATPLRLRKAIKRKKRKIDLSRVEYLVLDESDKLFEPELFKPIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRLMSNAFMFIRNMASDTIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLIFLQSKERAKELYSELAFDNIRVDVIHSDLPQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRSGEAITFYTEDDIPFLRNVANLMAASGCEVPSWLMELRKKKWKRHRPKRESISAKPDL | 543 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed2g1826 | 543 | Gene3D | - | 119 | 350 | IPR027417 | - | |
Aed2g1826 | 543 | SMART | helicmild6 | 403 | 484 | IPR001650 | - | |
Aed2g1826 | 543 | Gene3D | - | 351 | 528 | IPR027417 | - | |
Aed2g1826 | 543 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 6 | 540 | - | - | |
Aed2g1826 | 543 | Coils | Coil | 92 | 119 | - | - | |
Aed2g1826 | 543 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 362 | 523 | IPR001650 | - | |
Aed2g1826 | 543 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 144 | 172 | IPR014014 | GO:0003724 | |
Aed2g1826 | 543 | CDD | SF2_C_DEAD | 363 | 493 | - | - | |
Aed2g1826 | 543 | Pfam | Helicase conserved C-terminal domain | 381 | 484 | IPR001650 | - | |
Aed2g1826 | 543 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 175 | 496 | IPR027417 | - | |
Aed2g1826 | 543 | SMART | ultradead3 | 163 | 366 | IPR014001 | - | |
Aed2g1826 | 543 | MobiDBLite | consensus disorder prediction | 28 | 72 | - | - | |
Aed2g1826 | 543 | Pfam | DEAD/DEAH box helicase | 168 | 334 | IPR011545 | GO:0003676|GO:0005524 | |
Aed2g1826 | 543 | CDD | DEADc_DDX52 | 155 | 348 | IPR044764 | GO:0003724|GO:0005524|GO:0030490 | |
Aed2g1826 | 543 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 175 | 347 | IPR014001 | - | |
Aed2g1826 | 543 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 | 6 | 540 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed2g1826 | Aed-Chr2 | 23049414 | 23054025 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed2g1826 | 138 | 522 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.233 | 4.69e-50 | 176 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed2g1826 | K14779 | - | gmx:100800969 | 905.205 |