Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1814 ATGGACATGGATCATTTTCTAGACTTCTCCACCGACACCCACCTTCCTCCTCCCCCATTCTTCTTCAACTTCCCACCTTCTGTTCCGAGCGACGAAGCAGCGGAGCTGGAATGGCTATCCCAGTTCGTGGACGACGACGCGACGTCGTTTCACAGCTTCCCCTCATTCAATGGACCCCACACGAACACCACGCCGTTTCCATCCAACAACAATCACACAAACGATAGTAACGAATATTCCAAATCAAACATTCCGTCTTCTTCACCGCTCGTCGGGAAATCGAGATCGAGAAGGGAAGGGTCCGTCAACGGAGACGGCGGCGACGTGCGGCGGTGCAGCCACTGCGCCTCGGAAAAGACGCCGCAGTGGCGCAGCGGACCGCTGGGGCCGAAGACGCTGTGCAACGCTTGCGGCGTTCGGTTCAAGTCGGGTAGGCTCGTGCCTGAATACCGACCCGCCGCGAGCCCCACGTTCGTGCTGACTCAGCACTCGAACTCGCACCGCAAGGTCATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGCCAGCAACAGCAGCAGCAAGAGCAGTGCCACCACGACTTCAAAGTCTGCTGA 594 0.5859 MDMDHFLDFSTDTHLPPPPFFFNFPPSVPSDEAAELEWLSQFVDDDATSFHSFPSFNGPHTNTTPFPSNNNHTNDSNEYSKSNIPSSSPLVGKSRSRREGSVNGDGGDVRRCSHCASEKTPQWRSGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLRQQQQQQEQCHHDFKVC 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1814 197 Gene3D - 108 156 IPR013088 GO:0006355|GO:0008270
Aed2g1814 197 PANTHER GATA TRANSCRIPTION FACTOR 2 26 189 - -
Aed2g1814 197 SMART GATA_3 106 156 IPR000679 GO:0006355|GO:0043565
Aed2g1814 197 MobiDBLite consensus disorder prediction 53 94 - -
Aed2g1814 197 Coils Coil 170 190 - -
Aed2g1814 197 ProSiteProfiles GATA-type zinc finger domain profile. 110 142 IPR000679 GO:0006355|GO:0043565
Aed2g1814 197 Pfam GATA zinc finger 112 145 IPR000679 GO:0006355|GO:0043565
Aed2g1814 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 170 - -
Aed2g1814 197 MobiDBLite consensus disorder prediction 53 111 - -
Aed2g1814 197 ProSitePatterns GATA-type zinc finger domain. 112 137 IPR000679 GO:0006355|GO:0043565
Aed2g1814 197 CDD ZnF_GATA 111 158 IPR000679 GO:0006355|GO:0043565
Aed2g1814 197 PANTHER GATA TRANSCRIPTION FACTOR 26 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1814 Aed-Chr2 22806094 22806778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1814 28 187 C2C2-Gata Transcription Factor Family AT2G45050 54.839 2.35e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed2g1814 GATA 1.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1814 - - gmx:100782863 271.166