Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1809 ATGAACACCAAAGGGGAAAATGGAAACACTAGCACTACTAATGTTTGGTTGCATCTTGGTAATGGTGCTGCTGCTGCTACAAACGATAAGAGAGGTGGAGGTGGGATGGTTCCTCGATGCCAGGTGGAGGGGTGCCACGTGGCTCTGGTGAACGCGAAGGAATACCACAGGAGGCATAGAGTTTGCGATATGCATTCCAAGGCTCCCAAAGTTCTGCTCTTAGGCTTCCACCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATATCATGTCAGAGTTTGACGACTCAAAGAGGAGTTGTAGGAGGAGATTGGCGGGCCATAACGAGCGAAGAAGAAAGAACTCTCACCTTTCTACTAGACAAGCTTGTGCTCTCTCTCTTCTGTCATCTGGGAGTGGAAATGGTAGTGATTATAATTGGGTGCTATCTCCTCATCATGCTGATTTCTCCACAAGATGCAGTGCAGCATTACGTGAATTGATAGCAGAAAACCGTAGTGCTGCCCTCATGACTAGACAACAAGTACCACCACAGCAACAACAACAACAACAACAACAACTTGCTTATGATAATAGTAGAGATCACTGGTACCATCACCATCACCATGCTGCTGCACTAGTACTGGAACAAGACTTTGAGGAACAACAACAACCTCAACCTGAGTCCAATTATTTTCCAACACAGATGTTTCCCCAGACACAATAA 705 0.4596 MNTKGENGNTSTTNVWLHLGNGAAAATNDKRGGGGMVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKVLLLGFHQRFCQQCSRFHIMSEFDDSKRSCRRRLAGHNERRRKNSHLSTRQACALSLLSSGSGNGSDYNWVLSPHHADFSTRCSAALRELIAENRSAALMTRQQVPPQQQQQQQQQLAYDNSRDHWYHHHHHAAALVLEQDFEEQQQPQPESNYFPTQMFPQTQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1809 234 Pfam SBP domain 40 113 IPR004333 GO:0003677
Aed2g1809 234 ProSiteProfiles Zinc finger SBP-type profile. 37 114 IPR004333 GO:0003677
Aed2g1809 234 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 35 234 - -
Aed2g1809 234 SUPERFAMILY SBT domain 38 115 IPR036893 GO:0003677|GO:0005634
Aed2g1809 234 Gene3D - 31 101 IPR036893 GO:0003677|GO:0005634
Aed2g1809 234 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 234 IPR044817 GO:0003677
Aed2g1809 234 MobiDBLite consensus disorder prediction 212 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1809 Aed-Chr2 22775478 22776459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1809 37 133 SBP-box Gene Family AT2G42200 63.918 4.13e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed2g1809 SBP 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1809 - - gmx:100780159 271.937