Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1808 ATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCTCACCGGAAACGAGGACAGCGCCGCCGGGGCTTCTGACCAAACCCACCGTCAAATCTTCGACCACTACGCCTCTCACTCGCTCATCCCCGACCACTTCCTACACGCGCCAACACACTCCACCGCCGCGGCAACCACTGTGGATTTCAGCCACCACCACTTCAACCCTCAACCCCACCACCAAAACCACATGAACAACCACCACCACCACGCCTTCTTCGACCCACGCGCCTTCCACGGCGCGTCTAACGCCTCCTACCCCCCACCCCCTTCCATGCTCTCCCTTGACCCGCTGCCCCACGTCAACGGAGTTGGCCCTGGGCACGGGCCGGGTGGACTTCTCCTTGTCCCCAAGTCTGAAGACGTCGGTCGGCCCATGGACTTTGTCGGCTCACGAATTGGACTCAACCTCGGAGGACGGACTTACTTCTCGTCCTCCGAGGATGACTTCGTGAGCCGACTCTACCGTCGGTCTAGACCCGCGGAAGTGGGGTCGACCGTGTCGTCAAACTCCCCGCGGTGCCAGGCCGAGGGATGCAATGCTGATCTGTCGCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGTGAATTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGTTTGACTCAGCGATTCTGCCAGCAATGCAGCAGCCTGGATTGGAGGGCTGGGGTTGAAAAAGACGAAAGTGCCCTTGTGGGAGTGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGCCGCAGAAGAAAAACTCAGCAACCAACTCAAGAAATTCAGAAATCTCAGCCTTCTTTGGATAATGTTGCAAGAGCCCAGTCTTCGTCGTCCGTGACGGTGGCTGTGTCGCCGCCGGACTATTTCCGGCAGAGGCCATACCAAAGCACAAACCCTTCATCGACTTCAAGCTCACAGCTGTTTTTCTCAAGCGGGTAG 1014 0.575 MLDYEWGNPSTIMLTGNEDSAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSTAAATTVDFSHHHFNPQPHHQNHMNNHHHHAFFDPRAFHGASNASYPPPPSMLSLDPLPHVNGVGPGHGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEVGSTVSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSSLDWRAGVEKDESALVGVFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKSQPSLDNVARAQSSSSVTVAVSPPDYFRQRPYQSTNPSSTSSSQLFFSSG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1808 337 MobiDBLite consensus disorder prediction 282 337 - -
Aed2g1808 337 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 251 314 - -
Aed2g1808 337 Gene3D - 177 265 IPR036893 GO:0003677|GO:0005634
Aed2g1808 337 ProSiteProfiles Zinc finger SBP-type profile. 184 278 IPR004333 GO:0003677
Aed2g1808 337 Pfam SBP domain 187 277 IPR004333 GO:0003677
Aed2g1808 337 MobiDBLite consensus disorder prediction 271 337 - -
Aed2g1808 337 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 78 232 - -
Aed2g1808 337 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 251 314 IPR044817 GO:0003677
Aed2g1808 337 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 78 232 IPR044817 GO:0003677
Aed2g1808 337 SUPERFAMILY SBT domain 185 282 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1808 Aed-Chr2 22754259 22757703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1808 1 232 SBP-box Gene Family AT1G02065 45.418 1.06e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed2g1808 SBP 5.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1808 - - gmx:100778566 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1808 2 22754259 22757703 Aed2g1808 2 22754259 22757703 ECH