Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1800 ATGAGTGGGAACATGCAGGGGAAAAAGGAGAAAGAACTAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGCTACAGAAGCATGTGAAGAAGTATGGTCCCAGAGAATGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGAACTGGCAAGTCCTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATAGGCAAAAGAGGTTGGCTAGGATTCTGCAGACATCAGCAACAACTCCTAAATCGCAGAAAAATAAATCTAAAGTTCCTTCCTCTCTTCATGTTCCAACTTTGGAGGCTCCTAAGTTTTCATCATCAGAGGGAGAACCATCATCAAAGCCTCAGTCATGCTCACTGCCCTACATGGACAACTCTGAGGTTTTCAAAATGATGTCTTTTCCTGCAGATCTCATAATGTCCGAGTTGCCGAGTTCTAACACAATCCATGTTGAACAAGAGTTTACCCTTTTTGAGAGCTACAAAAGCACTGAACAGACTCAACAGATTGCCTTTCCTCAGATTCCAGAACTCCACAATGATCTGACATTCTCAATGGAAAGCCAAGAAGATATCTTGGCCAGAATTGATGAGCCATGTTTCATTGAAGACTTTGGTCCTCTTGAGACATCTGATTTTGGACTTGGTGGTGATCCACAACACCCCTTTGGCTTCCCTTTCTTTGATCCACCAGGAAGTTGCAGATTTGGAACAACCAAAATCAGTGACAGTTTCTTTGATGATTTCCCTGTTGACATTTTTGAGGAAACTAATTCTTTCCAAAGCAAATTGAACATAACATGA 822 0.4234 MSGNMQGKKEKELEYIRKGPWKAEEDEVLQKHVKKYGPREWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNRQKRLARILQTSATTPKSQKNKSKVPSSLHVPTLEAPKFSSSEGEPSSKPQSCSLPYMDNSEVFKMMSFPADLIMSELPSSNTIHVEQEFTLFESYKSTEQTQQIAFPQIPELHNDLTFSMESQEDILARIDEPCFIEDFGPLETSDFGLGGDPQHPFGFPFFDPPGSCRFGTTKISDSFFDDFPVDIFEETNSFQSKLNIT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1800 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
Aed2g1800 273 PANTHER TRANSCRIPTION FACTOR DUO1 5 71 - -
Aed2g1800 273 PANTHER TRANSCRIPTION FACTOR DUO1 72 268 - -
Aed2g1800 273 Pfam Myb-like DNA-binding domain 21 71 - -
Aed2g1800 273 PANTHER TRANSCRIPTION FACTOR DUO1 5 71 - -
Aed2g1800 273 PANTHER TRANSCRIPTION FACTOR DUO1 72 268 - -
Aed2g1800 273 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Aed2g1800 273 SMART sant 17 67 IPR001005 -
Aed2g1800 273 MobiDBLite consensus disorder prediction 80 102 - -
Aed2g1800 273 CDD SANT 20 65 IPR001005 -
Aed2g1800 273 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Aed2g1800 273 Gene3D - 18 71 - -
Aed2g1800 273 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1800 Aed-Chr2 22639392 22642060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1800 5 268 MYB Transcription Factor Family AT3G60460 36.119 1.42e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed2g1800 Myb_DNA-bind_6 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1800 K09422 - gmx:100805384 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1800 2 22639392 22642060 Aed2g1800 2 22639392 22642060 ECH