Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1786 ATGGGTGAGAAAGATGATGGCTTGGGTTTGGGGTTGAGTTTGAAGTTGGGATGGGGAGAGAATGAAAATGATGATAGCAATAATCAAAATCAACAACAACACCCTTTCAATGTGCACAAGCCTCCTCAATCGGTTCCTAACCAAAGGCCTTCTTCCTTCAATAGCTTGTTCCATTTTCATGATCGGAGCTCCGAGACGCGGTCGTTCTTCCGCGGAATAGACGTGAACCTGCCTCCTCCTCCGCCTTCTGCGGTGGCTCCGGCGGTATTCGACGACGAGAACGGGGTGTCGTCGCCGAACAGCACGATATCGAGCATCAGCGGGAAGCGGAGCGAGAGAGAGGGCGGCAACGGAGACGAGAACGAGAGAACGTCGTGCTCCCACGGCGGCGGAAGCGACGACGATGGCGGCGGAGACGGCGACACTTCGAGGAAGAAGCTGAGGCTGTCCAAGGAACAGGCCTTGGTGCTGGAAGAAACATTCAAGGAACACAACACACTGAACCCGAAGCAAAAGCAAGCTTTGGCAAAGCAGTTGAATTTGATGCCTAGACAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATATTTGAAGAGGTGCTGTGAGAATCTAACTGAAGAGAATAGGAGGCTTCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCCCCACAGCTTTACATGCAAATGAACCCTCCCACCACTCTCACAATGTGCCCTTCATGCGAGCGTGTTGCCGTCTCATCCTCTTCCTCATCAGCAACCATGTCCTCTGCCCTGCCTCCGGCTAATCTCAACCTGGTAGGCCCTACCGTCCAGCGGCCGGTGCCCGTCAACCCTTGGGCAGCAATGTTGAATCAACACTGTGGCCGGCCTGATAACTCCCGGCCCTAG 933 0.5305 MGEKDDGLGLGLSLKLGWGENENDDSNNQNQQQHPFNVHKPPQSVPNQRPSSFNSLFHFHDRSSETRSFFRGIDVNLPPPPPSAVAPAVFDDENGVSSPNSTISSISGKRSEREGGNGDENERTSCSHGGGSDDDGGGDGDTSRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSSSSSATMSSALPPANLNLVGPTVQRPVPVNPWAAMLNQHCGRPDNSRP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1786 310 Coils Coil 206 236 - -
Aed2g1786 310 MobiDBLite consensus disorder prediction 82 146 - -
Aed2g1786 310 PANTHER - 4 300 - -
Aed2g1786 310 MobiDBLite consensus disorder prediction 94 111 - -
Aed2g1786 310 Pfam HD-ZIP protein N terminus 1 114 IPR006712 GO:0005634
Aed2g1786 310 SMART halz 200 243 IPR003106 GO:0006355|GO:0043565
Aed2g1786 310 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
Aed2g1786 310 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Aed2g1786 310 MobiDBLite consensus disorder prediction 20 59 - -
Aed2g1786 310 SUPERFAMILY Homeodomain-like 127 201 IPR009057 -
Aed2g1786 310 MobiDBLite consensus disorder prediction 112 146 - -
Aed2g1786 310 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
Aed2g1786 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 300 - -
Aed2g1786 310 CDD homeodomain 144 201 IPR001356 GO:0003677
Aed2g1786 310 MobiDBLite consensus disorder prediction 1 59 - -
Aed2g1786 310 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355|GO:0043565
Aed2g1786 310 Gene3D - 133 204 - -
Aed2g1786 310 SMART HOX_1 142 204 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1786 Aed-Chr2 22509452 22513664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1786 26 297 Homeobox Transcription Factor Family AT3G60390 61.246 4.79e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed2g1786 HD-ZIP_N 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1786 K09338 - gmx:100810641 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1786 2 22509452 22513664 Aed2g1786 2 22509452 22513664 ECH
Aed2g1786 2 22509452 22513664 Aed3g0437 3 3113845 3117099 PCT