Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1770 ATGGCCAGTGATTTTTCTTCAGGTGCACAATCATACGAGGTTGTACATGATTCCCATGTTTCCGACCACGAAATTTTTGCTTCCTCCTCGTACAACAATCCGTTTCCAAACACTACCCATGTTGATGTCGATGAAGCATTCCACTTATTTGCATGCAACACGAAAGCGCCTCTGGAAGCGCGTGACGTGCACGCGCCTCCGAAATGTAAGGGCTTCAGGGGTGTGAGGCGGCGGCCGTGGGGAAAGTTTGCGGCGGAGATATGGGACCCGAAGAAGAAGAAGCATGGAAGGGTTTGGCTCGGGACGTATGAGACTGAAGAGGAAGCTGGTTTGGCTTATGATAGGGCTTGTTTCAAGATGAGAGGTAATAAAGCAAAGTTGAATTTTCCACACCTAATTGGATCCCACGCGCCGCCAGATAGAGTGAGTGTGGCGGCGGCGATTCCGAAGCGGTACTCGCTGGAGCCTTGTTTGCCGGTGGTGATGGAGGATAGCTCACAGCCACAACCACAAGGTTCAAAGAAAAGGAGGAACCTAGCTGATTTGCTTAATAGGTTAGCCAAAAATAGAAGCCAAAGTATGAGTTTTATTAAACTGAAATGA 603 0.4876 MASDFSSGAQSYEVVHDSHVSDHEIFASSSYNNPFPNTTHVDVDEAFHLFACNTKAPLEARDVHAPPKCKGFRGVRRRPWGKFAAEIWDPKKKKHGRVWLGTYETEEEAGLAYDRACFKMRGNKAKLNFPHLIGSHAPPDRVSVAAAIPKRYSLEPCLPVVMEDSSQPQPQGSKKRRNLADLLNRLAKNRSQSMSFIKLK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1770 200 CDD AP2 70 132 IPR001471 GO:0003700|GO:0006355
Aed2g1770 200 SUPERFAMILY DNA-binding domain 71 131 IPR016177 GO:0003677
Aed2g1770 200 Gene3D AP2/ERF domain 71 131 IPR036955 GO:0003700|GO:0006355
Aed2g1770 200 ProSiteProfiles AP2/ERF domain profile. 71 130 IPR001471 GO:0003700|GO:0006355
Aed2g1770 200 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 9 192 - -
Aed2g1770 200 SMART rav1_2 71 136 IPR001471 GO:0003700|GO:0006355
Aed2g1770 200 Pfam AP2 domain 71 122 IPR001471 GO:0003700|GO:0006355
Aed2g1770 200 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Aed2g1770 200 PRINTS Ethylene responsive element binding protein signature 112 132 IPR001471 GO:0003700|GO:0006355
Aed2g1770 200 PANTHER DNA-BINDING DOMAIN 9 192 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1770 Aed-Chr2 22412516 22413118 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1770 64 158 AP2-EREBP Transcription Factor Family AT2G44840 62.887 2.28e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed2g1770 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1770 K09286 - gmx:100792115 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1770 2 22412516 22413118 Aed2g1770 2 22412516 22413118 ECH
Aed2g1770 2 22412516 22413118 Aed3g0451 3 3191268 3191597 PCT