Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed2g1725 | ATGCCTCCGAAGACGGCGAAGCGAGGGTCGGCGTCGAGCGCCTCGAAGAGGGGTGGCAGAGGCGGCAGGGGAACACCGAAGGGTGCACAGAACCAACAGCAGCATGAAGCAGTGGAAGAGGCAGTGAGGGTCGAAGAGAAGCAACAACCCTTTGTTGTTGTTGTTGCTGAGGAGGAACAGCACAAGGTGGTGGTGGAAGAAGAAGAGAACCCTGTTTTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAAGAATCTGCTGTTTTTGTTGAGGATAAGGCTATTGATATGAACCAAATGGCTCCGGAGGCCGTGGAAGAATCGTCCCATGCGGCGGTGAAAAACGAAGAAGAGGAGATTAAGGAGTCCATAGATGAATATGAGAGAGATGAACGCTTAGATTTAGAGGATAATGATCCTGAGTATGAAGCTGAAGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCAAGATGAGGGTCATGAGGTGGGAAATGAAGTAGAGGAAGAAGAAGCTGAAGATAATGTAGGTGAAGAAGAGGGTGATACTGGTGAGGAAGAAGTTGAAGATGTTCATGATGAACTTGAGGGTGAAGTTGAGCATGAGCATGCTGGAGAGGAGCATGAGCATCCGGACTTTGCTGATGTGGAGGAAGAGGAACACCGAGAAGTTGTGAAGGAGAGGCGGAAGCGGAAAGAATTTGAAGTTTTTGTTGGGGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGTGAGGTTGGGGTGGTTACAGAGATCAGATTGATGATGAACCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCAAGACGAGCTGTAGGAGAGCTCCGAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGATTTGCATTTTTGGAATTTTCCTCTCGTTCTGAAGCTATGGATGCCTTTAAGCGATTGCAGAGGAGGGATGTTGTATTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCCTTTATTGATCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTTCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAGGTTGAGCTTGCCAGGAATATGCCAGCTGCTCGTAGGAAGGACTATGGGTTTGTTACATTTGGCACACATGATGCTGCCGTAAAATGTGCTGATAGTATTACAGGCACAGAGTTGGGTGAGGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCTAGACCACTCCAGAGAGGCCGCGGAAAACACATTAGTCGTGGTGACTATCGCTCTAGTCGGGGATCTGGAATGATGACTAGGCCTTCATGGAGCCGACCTGCACCTCGTTCTTTTCCTTCTCTTCCTTCTCGTAGTGTAAGAGGAGTAGGAGTAGGAAATCGTGCTCCACCTGTCAGACCAGTTAGTATGAGAGATAGACGCCCTATCATGTCCATACCAGCAAGAAGTAGGCCAGTACCTCCTCCATCTAGATCTTATGATAGGAGAGCAGTTGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGCTCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTACTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGACCATCTTACAGGGATTATACTGCCCGTGGTCCTAGCTACACTGAGCTACCTAGAAGCACATCTCGTGCTGCACCAAGGAGAGGCTATGTGGATGATGGGTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCTCCCCATCTAAGTTACCGTGAAGGACGTCCCCGAGATTATGATGCTCTTTCTGGCTCAAAACGTTCTTATGCTGCTATAGATGATGTTCCTCCACGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGACTAGACTATGACTATGGTGGTAGTGCTTCACATTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTATGGGATATGGTGGTGGTGGCAGCAGAAGTTCTATTTCTAGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGAGGAGGTTCTTTTGGTGGTGGTGATGTTGGTGGCATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCAGTGTATTCTAGCAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGTGGATCAGGATCTTATTATTGA | 2478 | 0.4609 | MPPKTAKRGSASSASKRGGRGGRGTPKGAQNQQQHEAVEEAVRVEEKQQPFVVVVAEEEQHKVVVEEEENPVFEEKQLVVEEKESAVFVEDKAIDMNQMAPEAVEESSHAAVKNEEEEIKESIDEYERDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNVGEEEGDTGEEEVEDVHDELEGEVEHEHAGEEHEHPDFADVEEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEIRLMMNPQTKKNKGFAFLRFETVEQARRAVGELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSEAMDAFKRLQRRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKVELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSSRGSGMMTRPSWSRPAPRSFPSLPSRSVRGVGVGNRAPPVRPVSMRDRRPIMSIPARSRPVPPPSRSYDRRAVAPAYPKSSMKRDYARREDIPPPRSRVTVDYGSRVASERRPSYRDYTARGPSYTELPRSTSRAAPRRGYVDDGYGQRFERPPPPPPPPHLSYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASHYGDAYGDRLGRSSMGYGGGGSRSSISSQDSHGMYSSRQGMSYGGGSFGGGDVGGMYSSSYGGDYISRGSDVGGSSYSSVYSSRGVGGGSSYMGGGGSGSYY | 825 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed2g1725 | 825 | PANTHER | RNA RECOGNITION MOTIF | 1 | 825 | - | - | |
Aed2g1725 | 825 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 317 | 382 | IPR000504 | GO:0003723 | |
Aed2g1725 | 825 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 414 | 479 | IPR000504 | GO:0003723 | |
Aed2g1725 | 825 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 237 | 305 | IPR000504 | GO:0003723 | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Aed2g1725 | 825 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 1 | 825 | - | - | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 795 | 825 | - | - | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 128 | 196 | - | - | |
Aed2g1725 | 825 | Gene3D | - | 402 | 519 | IPR012677 | - | |
Aed2g1725 | 825 | SMART | rrm1_1 | 236 | 309 | IPR000504 | GO:0003723 | |
Aed2g1725 | 825 | SMART | rrm1_1 | 316 | 395 | IPR000504 | GO:0003723 | |
Aed2g1725 | 825 | SMART | rrm1_1 | 413 | 488 | IPR000504 | GO:0003723 | |
Aed2g1725 | 825 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 412 | 494 | IPR000504 | GO:0003723 | |
Aed2g1725 | 825 | CDD | RRM_SF | 317 | 384 | - | - | |
Aed2g1725 | 825 | CDD | RRM_SF | 414 | 488 | - | - | |
Aed2g1725 | 825 | Coils | Coil | 109 | 132 | - | - | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 741 | 761 | - | - | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 795 | 809 | - | - | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 197 | 226 | - | - | |
Aed2g1725 | 825 | Gene3D | - | 316 | 398 | IPR012677 | - | |
Aed2g1725 | 825 | CDD | RRM_SF | 237 | 308 | - | - | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 740 | 761 | - | - | |
Aed2g1725 | 825 | SUPERFAMILY | RNA-binding domain, RBD | 236 | 381 | IPR035979 | GO:0003676 | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 592 | 606 | - | - | |
Aed2g1725 | 825 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 235 | 313 | IPR000504 | GO:0003723 | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 494 | 685 | - | - | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 101 | 226 | - | - | |
Aed2g1725 | 825 | MobiDBLite | consensus disorder prediction | 108 | 127 | - | - | |
Aed2g1725 | 825 | Gene3D | - | 151 | 315 | IPR012677 | - | |
Aed2g1725 | 825 | SUPERFAMILY | RNA-binding domain, RBD | 407 | 515 | IPR035979 | GO:0003676 | |
Aed2g1725 | 825 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 315 | 399 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed2g1725 | Aed-Chr2 | 21858372 | 21865937 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed2g1725 | 230 | 493 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 23.411 | 8.71e-15 | 76.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed2g1725 | - | - | gmx:100779340 | 1145.57 |