Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1725 ATGCCTCCGAAGACGGCGAAGCGAGGGTCGGCGTCGAGCGCCTCGAAGAGGGGTGGCAGAGGCGGCAGGGGAACACCGAAGGGTGCACAGAACCAACAGCAGCATGAAGCAGTGGAAGAGGCAGTGAGGGTCGAAGAGAAGCAACAACCCTTTGTTGTTGTTGTTGCTGAGGAGGAACAGCACAAGGTGGTGGTGGAAGAAGAAGAGAACCCTGTTTTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAAGAATCTGCTGTTTTTGTTGAGGATAAGGCTATTGATATGAACCAAATGGCTCCGGAGGCCGTGGAAGAATCGTCCCATGCGGCGGTGAAAAACGAAGAAGAGGAGATTAAGGAGTCCATAGATGAATATGAGAGAGATGAACGCTTAGATTTAGAGGATAATGATCCTGAGTATGAAGCTGAAGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCAAGATGAGGGTCATGAGGTGGGAAATGAAGTAGAGGAAGAAGAAGCTGAAGATAATGTAGGTGAAGAAGAGGGTGATACTGGTGAGGAAGAAGTTGAAGATGTTCATGATGAACTTGAGGGTGAAGTTGAGCATGAGCATGCTGGAGAGGAGCATGAGCATCCGGACTTTGCTGATGTGGAGGAAGAGGAACACCGAGAAGTTGTGAAGGAGAGGCGGAAGCGGAAAGAATTTGAAGTTTTTGTTGGGGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGTGAGGTTGGGGTGGTTACAGAGATCAGATTGATGATGAACCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCAAGACGAGCTGTAGGAGAGCTCCGAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGATTTGCATTTTTGGAATTTTCCTCTCGTTCTGAAGCTATGGATGCCTTTAAGCGATTGCAGAGGAGGGATGTTGTATTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCCTTTATTGATCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTTCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAGGTTGAGCTTGCCAGGAATATGCCAGCTGCTCGTAGGAAGGACTATGGGTTTGTTACATTTGGCACACATGATGCTGCCGTAAAATGTGCTGATAGTATTACAGGCACAGAGTTGGGTGAGGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCTAGACCACTCCAGAGAGGCCGCGGAAAACACATTAGTCGTGGTGACTATCGCTCTAGTCGGGGATCTGGAATGATGACTAGGCCTTCATGGAGCCGACCTGCACCTCGTTCTTTTCCTTCTCTTCCTTCTCGTAGTGTAAGAGGAGTAGGAGTAGGAAATCGTGCTCCACCTGTCAGACCAGTTAGTATGAGAGATAGACGCCCTATCATGTCCATACCAGCAAGAAGTAGGCCAGTACCTCCTCCATCTAGATCTTATGATAGGAGAGCAGTTGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGCTCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTACTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGACCATCTTACAGGGATTATACTGCCCGTGGTCCTAGCTACACTGAGCTACCTAGAAGCACATCTCGTGCTGCACCAAGGAGAGGCTATGTGGATGATGGGTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCTCCCCATCTAAGTTACCGTGAAGGACGTCCCCGAGATTATGATGCTCTTTCTGGCTCAAAACGTTCTTATGCTGCTATAGATGATGTTCCTCCACGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGACTAGACTATGACTATGGTGGTAGTGCTTCACATTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTATGGGATATGGTGGTGGTGGCAGCAGAAGTTCTATTTCTAGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGAGGAGGTTCTTTTGGTGGTGGTGATGTTGGTGGCATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCAGTGTATTCTAGCAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGTGGATCAGGATCTTATTATTGA 2478 0.4609 MPPKTAKRGSASSASKRGGRGGRGTPKGAQNQQQHEAVEEAVRVEEKQQPFVVVVAEEEQHKVVVEEEENPVFEEKQLVVEEKESAVFVEDKAIDMNQMAPEAVEESSHAAVKNEEEEIKESIDEYERDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNVGEEEGDTGEEEVEDVHDELEGEVEHEHAGEEHEHPDFADVEEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEIRLMMNPQTKKNKGFAFLRFETVEQARRAVGELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSEAMDAFKRLQRRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKVELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSSRGSGMMTRPSWSRPAPRSFPSLPSRSVRGVGVGNRAPPVRPVSMRDRRPIMSIPARSRPVPPPSRSYDRRAVAPAYPKSSMKRDYARREDIPPPRSRVTVDYGSRVASERRPSYRDYTARGPSYTELPRSTSRAAPRRGYVDDGYGQRFERPPPPPPPPHLSYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASHYGDAYGDRLGRSSMGYGGGGSRSSISSQDSHGMYSSRQGMSYGGGSFGGGDVGGMYSSSYGGDYISRGSDVGGSSYSSVYSSRGVGGGSSYMGGGGSGSYY 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1725 825 PANTHER RNA RECOGNITION MOTIF 1 825 - -
Aed2g1725 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 382 IPR000504 GO:0003723
Aed2g1725 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 479 IPR000504 GO:0003723
Aed2g1725 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 305 IPR000504 GO:0003723
Aed2g1725 825 MobiDBLite consensus disorder prediction 1 42 - -
Aed2g1725 825 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 825 - -
Aed2g1725 825 MobiDBLite consensus disorder prediction 795 825 - -
Aed2g1725 825 MobiDBLite consensus disorder prediction 128 196 - -
Aed2g1725 825 Gene3D - 402 519 IPR012677 -
Aed2g1725 825 SMART rrm1_1 236 309 IPR000504 GO:0003723
Aed2g1725 825 SMART rrm1_1 316 395 IPR000504 GO:0003723
Aed2g1725 825 SMART rrm1_1 413 488 IPR000504 GO:0003723
Aed2g1725 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 494 IPR000504 GO:0003723
Aed2g1725 825 CDD RRM_SF 317 384 - -
Aed2g1725 825 CDD RRM_SF 414 488 - -
Aed2g1725 825 Coils Coil 109 132 - -
Aed2g1725 825 MobiDBLite consensus disorder prediction 741 761 - -
Aed2g1725 825 MobiDBLite consensus disorder prediction 795 809 - -
Aed2g1725 825 MobiDBLite consensus disorder prediction 197 226 - -
Aed2g1725 825 Gene3D - 316 398 IPR012677 -
Aed2g1725 825 CDD RRM_SF 237 308 - -
Aed2g1725 825 MobiDBLite consensus disorder prediction 740 761 - -
Aed2g1725 825 SUPERFAMILY RNA-binding domain, RBD 236 381 IPR035979 GO:0003676
Aed2g1725 825 MobiDBLite consensus disorder prediction 592 606 - -
Aed2g1725 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Aed2g1725 825 MobiDBLite consensus disorder prediction 494 685 - -
Aed2g1725 825 MobiDBLite consensus disorder prediction 101 226 - -
Aed2g1725 825 MobiDBLite consensus disorder prediction 108 127 - -
Aed2g1725 825 Gene3D - 151 315 IPR012677 -
Aed2g1725 825 SUPERFAMILY RNA-binding domain, RBD 407 515 IPR035979 GO:0003676
Aed2g1725 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 399 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1725 Aed-Chr2 21858372 21865937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1725 230 493 Eukaryotic Initiation Factors Gene Family AT1G49760 23.411 8.71e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1725 - - gmx:100779340 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1725 2 21858372 21865937 Aed2g1725 2 21858372 21865937 ECH
Aed2g1725 2 21858372 21865937 Aed3g0480 3 3468991 3476606 PCT