Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1698 ATGGAAGACTCGTGGGAGAATTGGATTTCTTCTTTGGAAATGGGTGACGACAAATCCAATGGTCATCAACCTCATCACATTAACTCACTACTTGATCATGATCGTGATCAGGATAAGCTTCTCACAGGGATTGCCCTAGAGCCACCACCAACAAATTTCTCATTTCAAAACCACCACTCTTCTTCTACCGCCACCATGCCATATAATAATAATAATCATAATAATAGTGATTATTATTATAATTTCAATGCTTTTCCCACCACAAGCACCATTGGAAGTACTAGTACTAGCTTATCCTATGAGGATCATGTTACTGAGAGGCATGGCGAGATGCTAAAGTGTAATAGCTCAAACTCCATCAACATTTCTCAAACTCCACCTTCCTCATCCACTTTCATTTTGTCCTTTGAAAACTCAACTATGGAAGCTGCTACTACTAATAATAATGATAATGAAAATAATAATAGTAATTACCCTAATAAGCATTTTGAGGCCTTTGATGCTTGTTCTTCCCTTTTGAGCTCTGAAGTGTCACTCACTGCTACTAAACCAAAGGCCAAGCAAGGTGGTGGTGCCAACAAGAAGTATAGAAGCTCATCTGAGATTAAAGATCACATCATGGCTGAGAGGAAAAGGAGACAGGAACTCACTGAGAGGTTCATTGCACTTTCTGCCACCATACCCGGATTGAAGAAGACAGACAAAGCCTATATACTTCAAGAAGCCATCACATACATGAAACAACTTCAAGAGAGAGTGAAGGAGCTAGAGAATCAAAACAAGAGGAAAGCAACAAATTCAAGAATATTCATCAAGAAATCATCACACGTAGTGTGCTCATCAAGAGAAGAAGAAGATCAAGAAGCCACATCATGTGAAACCAATAACTCTTATAACAGGTCCACTCCACCGTCGCTGTTGTCACTGCCTCAAGTTGAAGCAAGAGTGTTGGACAAGGAAGTTCTCATTGGAATCCACTGCCAGAAACAAAAGGATATTGTGCTTAAAATCATGGCCTTGCTTCAAAATCTCCATCTATCTCTTTCTAGTAGTAGTGTGTTGCCATTTGGGACTTCCACACTGAAAGTTACAATCATTGCCCAGATGGGTGACAAATACTGCATGACAATGAATGATTTAGTAAAAAGCCTGAGGCAAGATCTCTTGAAGTCACATGACATTCAAGAGTCATATTCCCAAGAGTGCCATATATAA 1215 0.3959 MEDSWENWISSLEMGDDKSNGHQPHHINSLLDHDRDQDKLLTGIALEPPPTNFSFQNHHSSSTATMPYNNNNHNNSDYYYNFNAFPTTSTIGSTSTSLSYEDHVTERHGEMLKCNSSNSINISQTPPSSSTFILSFENSTMEAATTNNNDNENNNSNYPNKHFEAFDACSSLLSSEVSLTATKPKAKQGGGANKKYRSSSEIKDHIMAERKRRQELTERFIALSATIPGLKKTDKAYILQEAITYMKQLQERVKELENQNKRKATNSRIFIKKSSHVVCSSREEEDQEATSCETNNSYNRSTPPSLLSLPQVEARVLDKEVLIGIHCQKQKDIVLKIMALLQNLHLSLSSSSVLPFGTSTLKVTIIAQMGDKYCMTMNDLVKSLRQDLLKSHDIQESYSQECHI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1698 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 265 IPR036638 GO:0046983
Aed2g1698 404 Pfam Helix-loop-helix DNA-binding domain 205 250 IPR011598 GO:0046983
Aed2g1698 404 PANTHER BHLH TRANSCRIPTION FACTOR 4 395 - -
Aed2g1698 404 SMART finulus 206 255 IPR011598 GO:0046983
Aed2g1698 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Aed2g1698 404 Coils Coil 239 266 - -
Aed2g1698 404 MobiDBLite consensus disorder prediction 49 69 - -
Aed2g1698 404 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 395 - -
Aed2g1698 404 MobiDBLite consensus disorder prediction 44 69 - -
Aed2g1698 404 MobiDBLite consensus disorder prediction 281 304 - -
Aed2g1698 404 Gene3D - 200 270 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1698 Aed-Chr2 21593180 21597940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1698 197 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.354 5.74e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g1698 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1698 - - gmx:100808919 471.085