Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1692 ATGGCTTCTCCGCCACCCTTATCGTTAAACTTCGTCGGATCCGACACGGACCCGAACACCAACGCGTTTCCAACCGTTACAAGTTCTTTAACACCGCCATCTCCGCGCCGTTCCTCTCCGTTACAGAATCTCAGCCCTAGCATTTTGATCATCGTAACGGTTCTCGCCGTTACAGTTATAGTCTCCCTTGCGCTCTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGCTTCTCATCCTCCTCCGCGGCTCCCTCCGCCGCCGCCACTCCGATTTTCACCTCCAGCCGCCGCATCTCGCCCGAGGTAGTCCACTCCTCCCACGCCTCGGCAGCCTCCGTCATCGACACGCTCCCGCTCTTCACGTTCTCCTCCGTCACGCGCCGATCCGCTGGCGCCTCCGGCGACTGCGCCGTGTGCCTCTCGAAGTTCAACAACCACGACCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACGTGGCTCCAGTCGAACCTTTCGTGTCCGCTCTGCCGCTCCGCCATCGTCGCGGACGATTCCGACCTGGCGAAAATCCTCCGGCCGCCGTCCTCCGCCCCAGGAAGCAGCGGCAGCTTCCGCCTCGAGATTGGAAACATCAGCCGCCGCGGAACCGACGGAGCCGCCGAAGGCGGCTTCGGCGGGACCGCCACGCGCGGCGGCTCGCGGTCCTATTCCATTGGATCGTTCGACTATTTGGTGGACGATGAATCCGAGATTCAGTTCAGCCACGCTCGCCGGAGGAGCGTCGACGATGTGAAGGAGTTTCCGGCGGCGGCGGAGGCTCCGGCGAATCAAAACGAAGCGAGTCTCGCCGGAGAAGTTGGCGGCGTCAGAAGCTGGCTGAAGGATTACATGGATAGGGTTTCCGCTTCTATTTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGATTCTTCAACGGTGGCGGCAGCAGTAGCCGCCGAAGCGACGTCGTTCCGGTCGCTGCGGAATATGACATTGAAGGGAACCAAATTGGCGAAGAGATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1089 0.6152 MASPPPLSLNFVGSDTDPNTNAFPTVTSSLTPPSPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAAPSAAATPIFTSSRRISPEVVHSSHASAASVIDTLPLFTFSSVTRRSAGASGDCAVCLSKFNNHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSAIVADDSDLAKILRPPSSAPGSSGSFRLEIGNISRRGTDGAAEGGFGGTATRGGSRSYSIGSFDYLVDDESEIQFSHARRRSVDDVKEFPAAAEAPANQNEASLAGEVGGVRSWLKDYMDRVSASISSRTASFRSSGRFFNGGGSSSRRSDVVPVAAEYDIEGNQIGEEISEMFRWLSGV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1692 362 SUPERFAMILY RING/U-box 134 187 - -
Aed2g1692 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 22 330 - -
Aed2g1692 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 22 330 - -
Aed2g1692 362 CDD RING-H2_PA-TM-RING 138 181 - -
Aed2g1692 362 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Aed2g1692 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 190 IPR013083 -
Aed2g1692 362 SMART ring_2 139 180 IPR001841 -
Aed2g1692 362 Pfam Ring finger domain 138 181 IPR001841 -
Aed2g1692 362 MobiDBLite consensus disorder prediction 22 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1692 Aed-Chr2 21476534 21477622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1692 28 188 C3H Transcription Factor Family AT4G28890 35.152 2.45e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1692 K10663 - gmx:100817751 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1692 2 21476534 21477622 Aed2g1692 2 21476534 21477622 ECH