Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1678 ATGCCTTTGGAGGAGTTCTACAAGATATTTGGTGCCACAAAGCTCAAAAGTCCGTTTTGGACTTCATGGAAGCCCCTAGAATCACCATGCTTGTTGGAGCATGTAATTTTGCCAGTGGAACTTGGTTTCTTTGTGATCTTGTTAGTCCAACTCCTAAGTAAATATGTGAAACTGAACAGAAGAAAGCAAAACAAGGTCCCTGACAGTGCCACAAAAATGGTGCATCCAACCGCAATCAAATTTGGTTTTGCCTACAAAATCACCTTTGTTTGCACCACACTGTTGTTGGTTGTTCATGCATCACTGCTGATACTAATGCTCAACCAAGAGACTACACAATGCACCTCAAAGCTTCAATCATTCACATCAGAGATAGCTCAAGTGTTGTCATGGGCAATTAGTCTTGTAGCAATATGGAAGATATCAAAATCAAACACTTATTTCCCTTGGATTCTGAGGGCTTGGTGGCTTTGCAGTTTCATTCTGTGTGTTATAAGCACAACCCTTCATGTCCATTTTATAGTCACAAACAATGGCCAAATTAGTATAAGAGAATGTGCTGATTTCCTTGGTTTTCTTGCTTCATCGTGCCTTTTGGTTGTATCCACAAGAGGGAAAACAGGCACTGTCTTTCTTTTCACCACAAACGGTGCATCTGAGCCACTTCTTGAGAAGCATTCAGAGTGCCAAAACCAAAAGGAAGAGTCTCCATATGGAAAAGCCACTCTTCTCCAACTCATAAACTTCTCATGGCTCAACCCTTTGTTTGCCGTAGGATACAAGAAACCTCTTGAACAGAACGACATTCCTGATGTTGACATCAAGGACTCTGCTGAGTTTCTAACAAACTCCTTTGATGAAAGCCTTAGGAGAGTTAAAGAGAAAGATGGCACTCCAAACCCTTCTATCTACAAAGCAATCTACCTTTTTGCTAGGAAGAAAGCAGCAATCAATGCATTGTTTGCAATAGTGAATGCTTCAGCATCCTATGTTGGTCCATACTTGATAACTGACTTTGTGGATTTCTTGGGAGACAAGGGAACTCGCGGCTTGAAGAGTGGATACCTTCTTTCATTGGCTTTCCTATGTGCCAAGATGGTTGAGACCATAGCTCAGAGGCAATGGATTTTCGGGGCCAGGCAATTAGGCCTTCGCCTTAGAGCAGCGTTGATATCGCATATTTATCAGAAGGGCTTGCATCTTTCGAACAGATCGCGCCAGAGCCACACGGGTGGGGAGATAATGAATTACATGAGTGTGGATGTGCAGAGGATCACAGACTTTGTTTGGTATGTGAATGTGATATGGATGCTGCCTATACAGATTTCTTTGGCAGTGTTCATTTTGCATACTAATCTAGGACTAGGTTCATTGGCTGCATTGGCTGCTACATTGGCAGTGATGACTTTGAACATTCCTCTAACAAAGATACAGAAAAGATACCAAACCAAGATCATGGATGCAAAGGATAACAGAATGAAAGCCACTTCAGAAGTTCTCAGAAACATGAGGACCTTGAAGCTTCAAGCTTGGGACAGCCAATTTTCTCAAAGGATAGAAGCACTTAGGCAGGTAGAGTACAATTGGTTGATGAAGTCACTAAGGCAAGCAGCATTTTCTGCATTCATCTTTTGGGGGTCACCTACATTCATTTCTGTGATAACTTTTTGGGCTTGTATGTTCATGGGGATTGAACTCACAGCAGGAAGGGTCTTGTCTGCATTTGCCACGTTCCGAATGCTGCAGGATCCTATATTCAGCCTGCCTGATTTGCTCAATGTCATTGCTCAAGGAAAGGTTTCGGTTGATAGGATCGCTTCGTTCCTTCGCGACGAAGAAATCCAGCATGATGTCATTGAAAATGTTGCAAAGGAGAAAACAGAATTTGACATAGTTATTGAGAAAGGGAGGTTCAATTGGTATCCTGAGTCAAAAACTCCAACCATTGATGAAATAGAGTTGAAGGTTAAGAGGGGGATGAAGGTGGCAGTGTGTGGATCTGTTGGTTCAGGAAAGTCTAGTTTGCTATCAGGAATTTTGGGAGAAATATACAAACAATCTGGTACAGTTAAGATCAGTGGAACAAAGGCTTATGTTCCACAATCAGCATGGATACTCACTGGAAACATAAGGGACAACATCACCTTTGGAAAAGAGTACAATTGTGAAAAATATGAGAAGACTGTTGAGGCTTGTGCATTGAAGAAGGACTTTGAGCTGTTCTCATGTGGTGACATGACAGAGATTGGAGAGAGAGGGATTAACATGAGTGGGGGGCAGAAGCAAAGGATACAGATTGCTAGAGCAGTTTACCAGGATGCTGACATATACCTTTTTGATGATCCTTTCAGTGCTGTTGATGCTCACACTGGCACTCACCTCTTCAGGGAGTGCCTTATGGGGATTCTCAAAGAGAAAACTATAATTTTTGTTACACACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAGCACAAGCTGGAAAGTTTGAAGATCTTCTAAAGCAAAACATAGGATTTGAGTTATTAGTTGGTGCTCACAGCAAGGCTCTAGAATCAATTATTGTGGCTGAAAATACAAGTAAAACAAATTTAAATTCAATAGCTGAAGAAGGGGAATCCAAGTCAAGTCTCCAACATGTGCACACACAGCATGACACAGTGCAAGACAATAATCCTCCAGAGGGCGAGGGCAAAGGAAATGATGGAAAGTTGGTGCAAGAAGAGGAAAGAGAAACAGGAAGCATATCAAAAGAAGTTTACTGGGAATATTTGACCACTGTCAAAGGGGGAATCTTTGTTCCTCTCATACTCTTGGCACAGTCTTCATTCCAAATACTGCAGATTGCCAGCAACTATTGGATGGCTTGGGTTTGTCCCACAAGTAGTGATGCTAAGCCTTTATTTGACATGAATTTCATACTACTTGTTTATATGGCACTCTCAGTTGCTGGTTCATTCTGTGTTTTGCTGAGAGCCATGATGGTGTTGAATGCTGGACTTTGGACAGCACAGACATTTTTCACAAAGATGTTGCATAGTGCTTCCACAGATCAAAGTGTGCTAGACATGGAAATGGCAAACAAAATAGGATGGTGTGCTTTCTCAATAATACAGATTCTAGGCACTATTGCAGTGATGTGTCAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACTGCAGTCTGCATATGGTATCAAAGATATTATACACCAACAGCAAGAGAACTGGCTCGCTTAGCACAGATACAAATCACTCCAATTCTCCACCATTTTTCAGAATCTTTAGCAGGAGCAGCATCGATACGAGCTTTTGATCAAGAGGGCCGTTTCATATACACAAATCTTCTTCTTGTGGATGGCTTCTCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAATATACTTTCAAATTTTGTTTTTGCCTTCTCACTGGTCATGCTGGTGAGCCTCCCTGAAGGAATAATCAACCCAAGTATTGCCGGGTTGGCAGTAACATATGGGATCAATTTGAATGTGTTGCAAGCTTCAGTTATATGGAACATATGCAATGCAGAAAACAAAATGATATCAGTTGAGAGGATTCTTCAATATACAAACATAGCAAGTGAGCCACCTCTTGTGATTGAAGACAGCAGGCCACCAAGCAACTGGCCAGAAACTGGAACAATAAGTTTCAAAAATTTGCAGATACGTTATGCAGAACATCTACCATCTGTGTTGAAAAACATCACTTGCACATTCCCTGGAAGGAAGAAAGTTGGTGTTGTAGGGCGAACCGGGAGTGGAAAATCAACTCTCATACAAGCCATTTTCAGGATTGTTGAACCAACAGAAGGAAGCATTGTAATTGATAATGTGGACATATGCAAGATTGGTCTCCATGACTTGAGGTCAAGGCTTAGCATTATCCCACAAGACCCTGCCTTGTTTGAAGGCACTGTTAGGGGAAACTTGGATCCACTGCAGGATTACTCTGACATTCAAGTGTGGGAGGCTCTAGATAAATGTCAGCTAGGTCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGATTCCCCAGTGGTTGAAAATGGTGATAACTGGAGTGTGGGCCAAAGGCAATTATTTTGCCTTGGAAGAGCCCTGCTGAAGAGAAGTAGCATATTAGTACTAGATGAAGCAACAGCCTCAGTGGATTCTGCAACTGATGGGGTGATACAGAACATCATTAGCCAAGAGTTCAAAGATAGAACTGTTGTCACAATAGCTCATAGAATCCACACAGTTATTGATAGCGATTTGGTTTTGGTGCTCAGTGATGGGAGAGTTGTTGAGTATGATGAACCATCAAAGTTACTTGAGAGAGAAGATTCCTTCTTCTTTAAACTCATAAAGGAGTATTCTGGAAGATCACATAACTTCAGCAGCTTGGCAACACAACATGTCCAAAGCATGGAACAATTATAA 4497 0.4181 MPLEEFYKIFGATKLKSPFWTSWKPLESPCLLEHVILPVELGFFVILLVQLLSKYVKLNRRKQNKVPDSATKMVHPTAIKFGFAYKITFVCTTLLLVVHASLLILMLNQETTQCTSKLQSFTSEIAQVLSWAISLVAIWKISKSNTYFPWILRAWWLCSFILCVISTTLHVHFIVTNNGQISIRECADFLGFLASSCLLVVSTRGKTGTVFLFTTNGASEPLLEKHSECQNQKEESPYGKATLLQLINFSWLNPLFAVGYKKPLEQNDIPDVDIKDSAEFLTNSFDESLRRVKEKDGTPNPSIYKAIYLFARKKAAINALFAIVNASASYVGPYLITDFVDFLGDKGTRGLKSGYLLSLAFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSNRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQTKIMDAKDNRMKATSEVLRNMRTLKLQAWDSQFSQRIEALRQVEYNWLMKSLRQAAFSAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLRDEEIQHDVIENVAKEKTEFDIVIEKGRFNWYPESKTPTIDEIELKVKRGMKVAVCGSVGSGKSSLLSGILGEIYKQSGTVKISGTKAYVPQSAWILTGNIRDNITFGKEYNCEKYEKTVEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFRECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFEDLLKQNIGFELLVGAHSKALESIIVAENTSKTNLNSIAEEGESKSSLQHVHTQHDTVQDNNPPEGEGKGNDGKLVQEEERETGSISKEVYWEYLTTVKGGIFVPLILLAQSSFQILQIASNYWMAWVCPTSSDAKPLFDMNFILLVYMALSVAGSFCVLLRAMMVLNAGLWTAQTFFTKMLHSASTDQSVLDMEMANKIGWCAFSIIQILGTIAVMCQVAWQVFVIFIPVTAVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLLLVDGFSRPWFHNVSAMEWLSFRLNILSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIASEPPLVIEDSRPPSNWPETGTISFKNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPTEGSIVIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQDYSDIQVWEALDKCQLGHLVRAKEEKLDSPVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQNIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRVVEYDEPSKLLEREDSFFFKLIKEYSGRSHNFSSLATQHVQSMEQL 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1678 1498 Pfam ABC transporter 1258 1406 IPR003439 GO:0005524
Aed2g1678 1498 Gene3D - 629 859 IPR027417 -
Aed2g1678 1498 SUPERFAMILY ABC transporter transmembrane region 930 1222 IPR036640 GO:0005524|GO:0016021
Aed2g1678 1498 MobiDBLite consensus disorder prediction 881 920 - -
Aed2g1678 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 846 IPR027417 -
Aed2g1678 1498 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524
Aed2g1678 1498 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 93 1484 - -
Aed2g1678 1498 Gene3D - 1224 1476 IPR027417 -
Aed2g1678 1498 CDD ABCC_MRP_domain1 631 831 - -
Aed2g1678 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1204 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g1678 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 597 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g1678 1498 PANTHER - 93 1484 - -
Aed2g1678 1498 Pfam ABC transporter 650 783 IPR003439 GO:0005524
Aed2g1678 1498 Pfam ABC transporter transmembrane region 317 580 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g1678 1498 Pfam ABC transporter transmembrane region 1026 1168 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g1678 1498 CDD ABC_6TM_ABCC_D1 317 605 IPR044746 GO:0140359
Aed2g1678 1498 CDD ABCC_MRP_domain2 1239 1459 - -
Aed2g1678 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1241 1475 IPR003439 GO:0005524
Aed2g1678 1498 CDD ABC_6TM_ABCC_D2 942 1216 IPR044726 GO:0140359
Aed2g1678 1498 Gene3D ABC transporter type 1, transmembrane domain 907 1222 IPR036640 GO:0005524|GO:0016021
Aed2g1678 1498 Gene3D ABC transporter type 1, transmembrane domain 290 614 IPR036640 GO:0005524|GO:0016021
Aed2g1678 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 633 854 IPR003439 GO:0005524
Aed2g1678 1498 SUPERFAMILY ABC transporter transmembrane region 311 613 IPR036640 GO:0005524|GO:0016021
Aed2g1678 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1232 1469 IPR027417 -
Aed2g1678 1498 SMART AAA_5 1267 1459 IPR003593 -
Aed2g1678 1498 SMART AAA_5 658 831 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1678 Aed-Chr2 21181818 21194534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1678 619 872 Calmodulin-binding Proteins AT2G36910 27.174 5.31e-19 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1678 - - gmx:100817486 2677.89