Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1603 ATGAAGTTCAACATTGCAAATCCAACCACTGGTTGCCAGAAGAAGCTCGAGATTGATGACGACCTAAAGCTACGGGCATTTTGGGACAAGAGGATTTCACAGGAGGTCAACGGAGACGCCCTGGGCGATGAGTTTAAAGGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTAACACCTGGTCGTGTTCGTCTTTTGCTCCACAGAGGAACTCCTTGCTTCCGTGGTTATGGAAGGCGTAATGGAGAGCGTAGGAGGAAGTCTGTCCGTGGGTGCATTGTCAGCCCAGATCTCTCTGTTCTGAATTTGGTGATTGTGAAGAAGGGTGAAAGTGATTTACCAGGGCTGACTGATGTTGAAAAACCAAGAATGAGGGGTCCCAAGAGAGCATCCAAAATTCGTAAGCTCTTCAATCTTTCCAAGGAAGATGATGTGAGGAAAAAGCGTGCAAGAATTGCTGATAAGAAGAAGAGAATCGCAAAGGCAAAATCCGAGGCAGCTGAGTATCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGGGAACGCCGTAGTGAGAGTTTGGCTAAGAGGAGATCCAAGATTTCCAGTGTTGCTAAGCAAGCTACTGTGTAG 645 0.4682 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVNGDALGDEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSVAKQATV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1603 214 Coils Coil 155 182 - -
Aed2g1603 214 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Aed2g1603 214 PIRSF RPS6e 156 214 IPR014401 GO:0003735|GO:0005840|GO:0006412
Aed2g1603 214 PIRSF RPS6e 1 158 IPR014401 GO:0003735|GO:0005840|GO:0006412
Aed2g1603 214 PANTHER 40S RIBOSOMAL PROTEIN S6 1 157 - -
Aed2g1603 214 PANTHER 40S RIBOSOMAL PROTEIN S6 157 211 - -
Aed2g1603 214 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Aed2g1603 214 MobiDBLite consensus disorder prediction 188 203 - -
Aed2g1603 214 MobiDBLite consensus disorder prediction 188 214 - -
Aed2g1603 214 PANTHER 40S RIBOSOMAL PROTEIN S6 157 211 IPR001377 GO:0003735|GO:0005840|GO:0006412
Aed2g1603 214 PANTHER 40S RIBOSOMAL PROTEIN S6 1 157 IPR001377 GO:0003735|GO:0005840|GO:0006412
Aed2g1603 214 Gene3D - 157 200 - -
Aed2g1603 214 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Aed2g1603 214 Gene3D - 133 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1603 Aed-Chr2 20190517 20192556 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1603 1 208 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 75.962 4.75e-109 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1603 K02991 - gmx:100800507 346.665