Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1601 ATGGTTGAGGTGAAGGCAGGGACTCTACAGTTTCAGCAATTGGCACAAATTCAAGCTTTGAATAACAACAACAACAACACAACCGAGAACAATGGTGGAGTTTCATGGTCTACAATGGAAGAAGAGTACTTTGCGATGGAGATTTTGCAGAGGATTGACGACTATTTTGCTGAAGTTGATAGAATGGAGCAGGCAAATCAAAGGTCCAACAACAACAACAACAACAATGGTGGAGTTTCAATGGAAGAAAATCAATTTGCAATGGAGATATTGCAGAGGATTGATGACTATTATGCTGAAATTGACAGAATGGAGCAGGCAAATCAAAGGTCTATTGTAAATCCTGAAAATCAAAGGTCTATTGAACATCTTGAAAGAGTTATAATTGAAGAACAAGCAGATCAGTCCTCAGAATCTACGCCATTGTGTTCCATTTGTCTTGAAGTATTTTCAATTGGAACATATGCTACTCGCATGCCACCCCCTTGTTTTCATACCTTTCATTCACATTGCATCACAACTTGGCTCAACATTAGAGACACATGTCCTCTGTGTCGAAGGACTATCGTATCTAGTTAG 579 0.3921 MVEVKAGTLQFQQLAQIQALNNNNNNTTENNGGVSWSTMEEEYFAMEILQRIDDYFAEVDRMEQANQRSNNNNNNNGGVSMEENQFAMEILQRIDDYYAEIDRMEQANQRSIVNPENQRSIEHLERVIIEEQADQSSESTPLCSICLEVFSIGTYATRMPPPCFHTFHSHCITTWLNIRDTCPLCRRTIVSS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1601 192 Coils Coil 87 107 - -
Aed2g1601 192 Coils Coil 52 72 - -
Aed2g1601 192 Pfam Ring finger domain 143 186 IPR001841 -
Aed2g1601 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 186 - -
Aed2g1601 192 SUPERFAMILY RING/U-box 142 190 - -
Aed2g1601 192 ProSiteProfiles Zinc finger RING-type profile. 143 186 IPR001841 -
Aed2g1601 192 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 49 186 - -
Aed2g1601 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 191 IPR013083 -
Aed2g1601 192 SMART ring_2 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1601 Aed-Chr2 20175862 20179745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1601 105 186 C3H Transcription Factor Family AT5G01980 39.024 4.22e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1601 - K11434 pvu:PHAVU_007G098000g 88.1965