Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1576 ATGGGTCCAAACGCTGCGGCGGCGAAACAAGCGGAGAAGCTCCGAAGTGACGGCAACACTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCTGGTTTATTGGACGAATCGCGCACTGTGCCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAGCAATTCAGTTAAGGCCCACTATATGTTGGGGCTTGCATTGCTACAAAGACAAGAATCTGCCAAGGGAATCAAAGAATTGGAGAAGGCTCTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGAACATCGTCAAAACGATCATGGGAATTGCAGAGCTTGAAGTATGATTGCAGTTCTGTTGTCTATCATATTTATCGGCTTGTTGAGTTTCAGGTGCCAGATTATTTGTGCTGTAGAATCACACTTGACATCTTTCATGATCCCGTAATCACTCCAAGTGGACTTACGTATGAGAGAGCAGTGATTCTTGAACATCTTCAGAAGGTTGGTAGATTTGATCCAATCACACGGGAACCGCTTGATCCATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCTGTCGAGGCGTTCTTGGACAAACATGGATGGGCCTACAAGATGGATTAA 735 0.4653 MGPNAAAAKQAEKLRSDGNTYFKKDRFGAAIDAYTEAITLCPNVLVYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSVKAHYMLGLALLQRQESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYLEWERTSSKRSWELQSLKYDCSSVVYHIYRLVEFQVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGRFDPITREPLDPSQLVPNLAIKEAVEAFLDKHGWAYKMD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1576 244 Pfam U-box domain 167 239 IPR003613 GO:0004842|GO:0016567
Aed2g1576 244 PANTHER OS08G0113300 PROTEIN 5 161 - -
Aed2g1576 244 PANTHER OS08G0113300 PROTEIN 166 243 - -
Aed2g1576 244 ProSiteProfiles U-box domain profile. 166 240 IPR003613 GO:0004842|GO:0016567
Aed2g1576 244 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Aed2g1576 244 CDD RING-Ubox_CHIP 167 233 IPR045202 -
Aed2g1576 244 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Aed2g1576 244 Pfam Tetratricopeptide repeat 80 108 IPR019734 GO:0005515
Aed2g1576 244 SMART tpr_5 11 44 IPR019734 GO:0005515
Aed2g1576 244 SMART tpr_5 79 112 IPR019734 GO:0005515
Aed2g1576 244 SMART tpr_5 45 78 IPR019734 GO:0005515
Aed2g1576 244 SUPERFAMILY TPR-like 10 111 IPR011990 GO:0005515
Aed2g1576 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 243 IPR013083 -
Aed2g1576 244 SUPERFAMILY RING/U-box 162 241 - -
Aed2g1576 244 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Aed2g1576 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 161 IPR045200 GO:0000209|GO:0061630
Aed2g1576 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 166 243 IPR045200 GO:0000209|GO:0061630
Aed2g1576 244 SMART Ubox_2 170 233 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1576 Aed-Chr2 19843626 19849236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1576 4 243 U-box Gene Family AT3G07370 61.679 6.24e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1576 K09561 - gmx:100796519 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1678 9 20264829 20268749 Aed2g1576 2 19843626 19849236 PCT