Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1562 ATGGAAAACCAGTTCTTTCTGAATTCTGGGGTGTCACAAACACAAACACAGCAGCACCACCCTCTTCTTCAATTTGAACCACCCTCTTGGCAATCACAAAACATGGGGATTCAACAATCAGTTATGATGAATTGTGCCTCTGACCAAACCCAAGATGATAGCTTTTACAACCACCCCAATTGGGACAAGTCAACACCAACATCAGATCATGGCCTTCTAAATCACCACTTTGATTCCTCAGCACTGAGTTCAATGGTTTCATCACCAGCAGCAACATCATCCAACCCCAACAACAACATCACCAATGAGAATTTCATCATCAGGGAATTGCTGGGGAAATTGGGAGCAATTGGAAGCTCTGATGAGATCCCACAACAGCACTCTCTGATAGTGGCATCATCTTCTTACATGAATAATAATAATAACAATAATGGCAATAACAACAACAGAACCAACACTTCTTCATGCTACAGCACTCCTTTGAGTTCCCCTCCAAAGCCAATGGCTTTGAATTCAAGTGTGGCTGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGCAGGAGTTTCAATGATAGAAGGAGTGTCCAATTGAGTGTGAACAATGCTGAATTGCCTCAAAGATCTGTAGTACCAGTAATGGAACATGGTGTGAAGTTACCTAGAGTCTCAAGTAGTCCATTGCTGAAAACACTTGGATCTCAAATCGGTGTAAAAGAGAACAACGATTCAGCATTTCAGGAGCATGAGAGAATGGAAGTGGAGGCCAATTCTCAAGAGGAATCTACAATTTCTGAGCAAACCCCAATTGGGGTGAAAACTTCCCATGATGTGACGAATTCCAGAAAAAGAAAAGCTTCTTCCAAAGGAAAATCCAAGGGTGTTGAAGGTAGTGAGGATGATTCAAATTCAAAGCGCAGCAAGGCCAATAATAATGAGGATGAGGGAAATGAAAAAAATCACCCAATGAAGGTTGAGGAAGAGTCCAAAGCAGCAGTGGAAGAGAAACAACAGAACAAAAGTAACTCATCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAACTGCTACAAGATCTTGTACCAGGTTGCAATAAGGTAACTGGCAAGGCACTTATGCTAGATGAAATTATAAACTATGTTCAGTCATTGCAGCGTCAAGTTGAGGTAACCATTAACCAATCTTGGCAAATAAGCATCTCGATTTCTCAAATGATTGTCATCATCAATTCTTTGGCAACACACCAAAATGCAATATTCTCATTAGATTCCTCAGCAGAAGCCTTTTATGGGCACCAGGCTCAGCAAAACCCAGTTATCCATAATAATAACAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGATGCTTCTTTGTGCCAAAATCTTGCCATGCATTTACCTCTCCTAAATGGGTTTAATGAAGGTGGCTCTCAGATGGGGTTTGGCCAAGCTGCTAACATGAAAACATCAATACAATCCCCGAGTTTCAACGGTTCAAATAATGTACCACAGATGAAAATTGAGCTCTGA 1653 0.4198 MENQFFLNSGVSQTQTQQHHPLLQFEPPSWQSQNMGIQQSVMMNCASDQTQDDSFYNHPNWDKSTPTSDHGLLNHHFDSSALSSMVSSPAATSSNPNNNITNENFIIRELLGKLGAIGSSDEIPQQHSLIVASSSYMNNNNNNNGNNNNRTNTSSCYSTPLSSPPKPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRRSVQLSVNNAELPQRSVVPVMEHGVKLPRVSSSPLLKTLGSQIGVKENNDSAFQEHERMEVEANSQEESTISEQTPIGVKTSHDVTNSRKRKASSKGKSKGVEGSEDDSNSKRSKANNNEDEGNEKNHPMKVEEESKAAVEEKQQNKSNSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEVTINQSWQISISISQMIVIINSLATHQNAIFSLDSSAEAFYGHQAQQNPVIHNNNNIPNRTVTHCSVDPLDASLCQNLAMHLPLLNGFNEGGSQMGFGQAANMKTSIQSPSFNGSNNVPQMKIEL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1562 550 PANTHER BHLH TRANSCRIPTION FACTOR 2 521 - -
Aed2g1562 550 SMART finulus 376 426 IPR011598 GO:0046983
Aed2g1562 550 MobiDBLite consensus disorder prediction 285 343 - -
Aed2g1562 550 MobiDBLite consensus disorder prediction 243 361 - -
Aed2g1562 550 Pfam Helix-loop-helix DNA-binding domain 374 421 IPR011598 GO:0046983
Aed2g1562 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 370 420 IPR011598 GO:0046983
Aed2g1562 550 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 521 IPR024097 GO:0006355
Aed2g1562 550 CDD bHLH_AtBPE_like 360 425 - -
Aed2g1562 550 MobiDBLite consensus disorder prediction 140 164 - -
Aed2g1562 550 Gene3D - 367 441 IPR036638 GO:0046983
Aed2g1562 550 MobiDBLite consensus disorder prediction 251 265 - -
Aed2g1562 550 MobiDBLite consensus disorder prediction 266 284 - -
Aed2g1562 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 437 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1562 Aed-Chr2 19352745 19356764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1562 1 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 38.971 6.34e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed2g1562 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1562 - - gmx:100776143 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1686 9 20367259 20371361 Aed2g1562 2 19352745 19356764 PCT