Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1560 ATGGGTATCTCCAGAGATTCTATGCACAAAAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGCTCGGTCGCCAGCCTGCTAACACTAAGTTGTCAGGCAACAAGACGATCAGGAGGATCCGTGTTAGAGGTGGAAATGTGAAATGGAGGGCACTTAGATTGGATACTGGAAATTACTCATGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTATACTTGATGTGGTTTACAATGCATCTAACAATGAGCTCGTGCGTACTCAGACCCTTGTCAAAAGTGCTATTGTTCAGGTTGATGCTGCTCCTTTCAAACAATGGTACCTTCAGCACTATGGTGTTGAGATTGGAAGGAAGAAGAAGACAGCAGCAGCCAAGAAGGAAAGTGCAGAGGAGGGTGATGCTGCCGCCATTGCAGATGATGCCAAGAAGAGTAATCATGTGCAGAGAAAATTGGAGAATCGCCAGAAGGACCGCACACTTGATTCCCATATCGAAGAGCAGTTTGGTGGTGGGCGTTTGCTTGCTTGCATCTCCTCTCGACCTGGTCAATCTGGCAGATGTGATGGCTACATTCTGGAAGGTAAGGAGTTGGAATTCTACATGAAGAAAATCCAGAAGAAGAAGGGAAAGGGTGCTGCTTGA 663 0.4736 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSGNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKESAEEGDAAAIADDAKKSNHVQRKLENRQKDRTLDSHIEEQFGGGRLLACISSRPGQSGRCDGYILEGKELEFYMKKIQKKKGKGAA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1560 220 PANTHER 40S RIBOSOMAL PROTEIN S8 1 220 - -
Aed2g1560 220 TIGRFAM eS8: ribosomal protein eS8 1 201 IPR001047 GO:0003735|GO:0005840|GO:0006412
Aed2g1560 220 MobiDBLite consensus disorder prediction 1 35 - -
Aed2g1560 220 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Aed2g1560 220 CDD Ribosomal_S8e_like 5 199 - -
Aed2g1560 220 MobiDBLite consensus disorder prediction 133 167 - -
Aed2g1560 220 PANTHER 40S RIBOSOMAL PROTEIN S8 1 220 IPR001047 GO:0003735|GO:0005840|GO:0006412
Aed2g1560 220 Pfam Ribosomal protein S8e 5 199 IPR022309 -
Aed2g1560 220 MobiDBLite consensus disorder prediction 11 26 - -
Aed2g1560 220 Gene3D - 164 217 - -
Aed2g1560 220 Gene3D - 32 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1560 Aed-Chr2 19308739 19311604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1560 1 208 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 81.731 7.01e-123 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1560 K02995 - gmx:100794937 355.91