Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1555 ATGGAAGCTAACGGGATTGGTGAACTCAAGATACCTCTGCTGCTGCAGACTCCGGAAGAAGGCGCCACCGCCGTTAGGACCGTCACGTTCCAGCTGCGTGACGTCGAGTGTGCTTCATGCGTGAATTCCGTCGAGGCCGTCGTTAGGAGCCTTGACGGCGTCAAGAGCGTCGCCGTTTCGCCGCTGGATGGCCGAGCCGCAATCAAGTTTGCCCCTAAGTTTGTTACGGTGAAAAAAATTAAAGAAAGTATAGAGGAAAGTGGATTTGGAGTTGATGAGGTTCATGAGCAGGACATAGCAGTGTGCCGAGTGAGGATTAAAGGAATGGCGTGCACAAGCTGCTCCGAGTCTGTTGAGAATGCCCTTAAAATGGTTGAAGGGGTGAAAAAGGCAATTGTTGGCCTTGCTTTGGAGGAGGCAAAAGTGCACTTTGATCCTAACCTCACTAATGTTGACAAGATAATTGAGGCCATAGAAGATGCAGGTTTTGGTACTGATCTTATTAGCTCTGGGAATGATGCAAACAAAGTGCATCTAAAGCTTGAAGGGGTTGATTCTGCAGAAGATGTAAATGCAGTAATGTCTTCTCTTGAGTTAGCTGTGGGGGTGAACCATGTTGAGATGGATTTGTCAGAACATAAAGTTACAGTTAGTTTTGATCCAGACATTACAGGTCCAAGGTATCTCATTCACTGTGTTCAGGAAGCTAGCTATGGCCCCAAGAAGTATCGAGCAACCTTGTATTCTCCTTCGGGGCAACGAGAAAGGGATAAGGTGAATGAAATCCGTATGTATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCCGTTCCTGTGTTTGTATTTGCCATGGTGCTTCCCATGCTTCCTCCTTATGGCAACTGGTTAAACTACAGGATCCACAATATGCTTAGTCTTGGGTTGTTTTTAAGATGGATTCTTAGCACGCCTGTGCAGTTCATAGTTGGCAAAAGGTTCTATGTGGGATCATATCATGCACTGAAGCGAAAATCTGCCAACATGGATGTGCTGGTTGCACTGGGGACAAATGCAGCTTATTTTTACTCTCTCTATATTTTAATTAAAGCACTGACTTCAGATGCATTTGAAGGACAAGATTTCTTTGAGACGAGTACCATGCTGATATCATTTATTCTATTAGGGAAGTATTTGGAAATTGTGGCTAAAGGGAAAACATCAGATGCTTTAGGAAAGCTGACTCAACTTGTTCCTGATAAAGCTTATTTAGTAGCAATTGATACTGACGGAAATATCATCACAGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCTGTTGATGGTATAGTTATAAAAGGGCAAAGCTATGCTAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAAGCCCAGGAGACAAGGTTATCAGTGGAACCATTAATGAGAATGGCTGCTTACTGGTCAAGGCCACGCATGTTGGATCTGACACTGCACTTTCTCAAATAGTTCAACTTGTTGAAGCTGCTCAACTGGCCAAAGCACCAGTTCAAAAACTCGCTGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGCAGCACTAATAACTTGGCTTGCATGGTTCATTCCTGGGAAAGCTGGTATTTACCCTAAACATTGGATACCAACAGCAATGGATGCATTTGAGCTTGCTTTGCAGTTTTCTATTTCTGTTCTGGTTGTTGCTTGCCCATGTGCTCTGGGTCTTGCAACACCAACTGCAGTTATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTTCTCATTAAGGGTGGAGATGCACTGGAAAAGGCACACAAGGTAAAGATTGTTGTGTTTGATAAGACTGGGACACTAACAGTTGGGAAGCCAGAAGTAGTTAGTGCAGTGCTGTTTTCTGGATTTTCTATGGAGGAATTATGTGACATGACAATTGCTGTGGAGGCAAGTAGTGAGCATCCACTAGCAAAAGCTGTGGTGACACATGCAAAGAGGCTGCGCCAGAAATTTGGTTCTTGCACTGAGGAAGTCCCAGATGTGGATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAGGTTGGTGATAGAACAGTTGTGGTTGGAAACAAGAGACTCATGCATGCTTGTAATGTTCGGATAAGTTCCGAGGTTGAGAAGTACATATCTGAAAACGAAATTCTGGCTAGAACTTGTGTTTTGGTTTCAATTGATGGAAAGATTGCCGGCGCGTTCTCTGTAACTGATCCTGTAAAACCAGAGGCTAAACGTGTCATATCTTTCCTCCACTCCATGGGCATCTCAAGCATCATAGTGACTGGTGATAACTATGCTACTGCAACTGCTATTGCAAATGAAGTGGGTATTGATGAGGTCTTTGCTGAAACAGATCCTGTGGGCAAAGCAGATAAGGTGAAAGACTTGCAGGCGAAAGGAATGACTGTGGCAATGGTAGGTGATGGAATAAACGACTCACCAGCCCTGGTTGCTGCTGATGTTGGCATGGCAATAGGTGCTGGAACTGACATAGCTATAGAAGCAGCCGATATAGTTCTGGTAAAAAGCAGTTTGGAAGATGTGATCACAGCGATAGACCTATCGAGGAAGACGATGTCGCGCATCCGGCTGAACTACATCTGGGCTCTTGGTTACAATATTCTTGGCATGCCAATTGCTGCTGGCGTCTTGTACCCTTTTGCTGGAATCAGATTGCCTCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCCTCTCTTAGCGTTGTTTCTTCGTCTCTTTTGCTGCAGTTCTATAAGAAACCTCTGCATATAGAATCATCCTCTTGA 2874 0.4419 MEANGIGELKIPLLLQTPEEGATAVRTVTFQLRDVECASCVNSVEAVVRSLDGVKSVAVSPLDGRAAIKFAPKFVTVKKIKESIEESGFGVDEVHEQDIAVCRVRIKGMACTSCSESVENALKMVEGVKKAIVGLALEEAKVHFDPNLTNVDKIIEAIEDAGFGTDLISSGNDANKVHLKLEGVDSAEDVNAVMSSLELAVGVNHVEMDLSEHKVTVSFDPDITGPRYLIHCVQEASYGPKKYRATLYSPSGQRERDKVNEIRMYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYRIHNMLSLGLFLRWILSTPVQFIVGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYILIKALTSDAFEGQDFFETSTMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDTDGNIITETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVAALITWLAWFIPGKAGIYPKHWIPTAMDAFELALQFSISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKIVVFDKTGTLTVGKPEVVSAVLFSGFSMEELCDMTIAVEASSEHPLAKAVVTHAKRLRQKFGSCTEEVPDVDDFEVHMGAGVSGKVGDRTVVVGNKRLMHACNVRISSEVEKYISENEILARTCVLVSIDGKIAGAFSVTDPVKPEAKRVISFLHSMGISSIIVTGDNYATATAIANEVGIDEVFAETDPVGKADKVKDLQAKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFAGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIESSS 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1555 957 ProSitePatterns Heavy-metal-associated domain. 106 135 IPR017969 GO:0046872
Aed2g1555 957 SUPERFAMILY HMA, heavy metal-associated domain 25 94 IPR036163 GO:0046872
Aed2g1555 957 TIGRFAM TIGR00003: copper ion binding protein 28 91 IPR006122 GO:0005507
Aed2g1555 957 TIGRFAM TIGR00003: copper ion binding protein 104 163 IPR006122 GO:0005507
Aed2g1555 957 Pfam haloacid dehalogenase-like hydrolase 624 849 - -
Aed2g1555 957 ProSiteProfiles Heavy-metal-associated domain profile. 176 242 IPR006121 GO:0046872
Aed2g1555 957 CDD HMA 104 164 IPR006121 GO:0046872
Aed2g1555 957 Gene3D - 619 885 IPR023214 -
Aed2g1555 957 SFLD Haloacid Dehalogenase 610 887 - -
Aed2g1555 957 SUPERFAMILY Calcium ATPase, transduction domain A 428 514 IPR008250 -
Aed2g1555 957 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 19 953 - -
Aed2g1555 957 SUPERFAMILY Calcium ATPase, transmembrane domain M 373 620 IPR023298 -
Aed2g1555 957 Gene3D - 396 518 - -
Aed2g1555 957 Gene3D - 174 241 - -
Aed2g1555 957 ProSitePatterns E1-E2 ATPases phosphorylation site. 630 636 IPR018303 -
Aed2g1555 957 CDD HMA 37 91 IPR006121 GO:0046872
Aed2g1555 957 Gene3D - 639 768 IPR023299 GO:0000166
Aed2g1555 957 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 341 944 IPR027256 GO:0006812|GO:0016021|GO:0019829
Aed2g1555 957 Gene3D - 21 92 - -
Aed2g1555 957 SUPERFAMILY HAD-like 626 941 IPR036412 -
Aed2g1555 957 SUPERFAMILY HMA, heavy metal-associated domain 97 170 IPR036163 GO:0046872
Aed2g1555 957 SUPERFAMILY HMA, heavy metal-associated domain 171 241 IPR036163 GO:0046872
Aed2g1555 957 ProSiteProfiles Heavy-metal-associated domain profile. 27 93 IPR006121 GO:0046872
Aed2g1555 957 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 381 912 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed2g1555 957 Pfam Heavy-metal-associated domain 29 89 IPR006121 GO:0046872
Aed2g1555 957 Pfam Heavy-metal-associated domain 103 163 IPR006121 GO:0046872
Aed2g1555 957 ProSiteProfiles Heavy-metal-associated domain profile. 101 167 IPR006121 GO:0046872
Aed2g1555 957 PANTHER ATP7, ISOFORM B 19 953 - -
Aed2g1555 957 Pfam E1-E2 ATPase 413 606 - -
Aed2g1555 957 ProSitePatterns Heavy-metal-associated domain. 32 60 IPR017969 GO:0046872
Aed2g1555 957 Gene3D - 101 171 - -
Aed2g1555 957 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Aed2g1555 957 PRINTS P-type cation-transporting ATPase superfamily signature 760 771 - -
Aed2g1555 957 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Aed2g1555 957 PRINTS P-type cation-transporting ATPase superfamily signature 628 642 - -
Aed2g1555 957 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
Aed2g1555 957 PRINTS P-type cation-transporting ATPase superfamily signature 782 792 - -
Aed2g1555 957 CDD P-type_ATPase_Cu-like 269 931 - -
Aed2g1555 957 SFLD p-type atpase 610 887 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1555 Aed-Chr2 19242154 19248085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1555 30 954 Primary Pumps ATPases AT1G63440 56.928 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1555 K17686 - gmx:100793894 1731.84